Asti009034.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius sticticus
Gene Symbol
-
Assembly
GCA_963966075.1
Location
OZ014506.1:110739580-110743202[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.061 4.7 9.3 1.8 1 21 28 48 28 49 0.93
2 16 0.075 5.7 9.0 0.4 2 23 147 168 146 168 0.93
3 16 3.1e-05 0.0024 19.7 0.8 2 23 175 196 174 196 0.97
4 16 2e-06 0.00015 23.4 1.0 1 23 202 224 202 224 0.99
5 16 0.00022 0.017 17.0 2.1 1 23 231 253 231 253 0.99
6 16 6.7e-06 0.00052 21.7 3.4 1 23 259 281 259 281 0.99
7 16 0.0041 0.32 13.0 0.6 1 23 287 309 287 309 0.99
8 16 0.0019 0.15 14.0 5.5 1 23 315 337 315 337 0.98
9 16 2.5e-05 0.0019 20.0 1.3 1 23 353 376 353 376 0.98
10 16 0.0044 0.34 12.9 0.6 1 23 383 405 383 405 0.99
11 16 0.059 4.6 9.3 3.4 1 20 411 430 411 434 0.94
12 16 0.0003 0.023 16.5 0.6 1 23 440 462 440 462 0.99
13 16 0.0011 0.081 14.8 0.9 1 23 468 491 468 491 0.98
14 16 0.0034 0.26 13.2 0.7 1 23 497 519 497 519 0.99
15 16 0.0038 0.29 13.1 1.0 1 23 525 548 525 548 0.96
16 16 0.032 2.4 10.2 0.1 2 23 555 576 554 576 0.96

Sequence Information

Coding Sequence
ATGAGTACGTTTGAGCACCAATCGTCATTGAAACATGAACAGACTGATGCGGATGACAATTTTGGGACTCTGATCAAGAAATTTTATTGCAGTTTATGTGAATTCGGGTTCACCAAAAAGAAGTACTTAGTAAACCATTTCAAGTTATGCAAGGATGTTGAGAATCCAACTGACAGACTGGGCGCAGAGCCAAgCACCGTTAAAAGTGAACCTTGTGTTGAGGAGCTAGAAGACACGCAATTGTTTGACGAGCCAACCACCGACATAAAACACGAAGAATTAGAAATTTCCGAAACTGCAATTTCCGGCACAACTTCTACACCACCGGTACATCCGAAGACAGAAACATCCGAAGAAGATGAAGTATTCGACGGTGACCGTTCTGAGAAGAACAACCGTCTCGAGAAACGTAAAAGGCGTAGTGAACAAAAGCcgatcaaatgtatcaaatgcAAATACGTTTCTCCGAGTCCCTCCGATTTTAGAAGACATGCGACAACGCACACGAACGAGAAACCGTTGAAATGTGACGAATGTGATTATGCTTGTGCAGAAGCTTACTCTCTCAGAACGCACATGAGAACGCACGCGAACGACAGACCATACAAATGTAAAATCTGCGAGTACGCCTCCGTGCGCTCGTACGCTCTTACAAAACACATGCGAACGCATCTGTACCAAGAGAAACCGTTTAAATGTCAAATCTGTGACTATGCTTGTACAGACATTACTAAGCTCAAAGAACACGTACGGACGCATACTGGCGAGAAGCCGTATGAATGTAATGTATGTGATTATTCTTGTGCACACCGTGCGTATCTCAAGGTGCATATGCGGACGCATACAAAAGAAAAACCGTTTAAATGTAAAGTGTGTGATTATACTTGTGCAGCTAGTCAGGCTGTCGCGTCCCATATGTTAACGCATAGCGGCGCGAAGCCATTTCACTGCGACAAATGCAGTTTTGCAACTAAGCGTCATCGCCAGCTGATAGcccatatgagaacacatacaaagaaaaaacaaacttCACTCCTAGAAAAAGTAGAGAAGCCCTTCAAATGTGAAGAATGTAACTACGCTGCTACGCAACGCGACTATCTGAAACGGCATATGAGTACTAGGCATTCAGAAGCGAAAGAACGATTCAAATGCGACCAATGCGAGTACGCTAGCGCCTTACGCGGGAGTCTTGCGCACCATATGAGCACGCATACAAAGGAGAAACCGTTCCACTGCGACAAATGCGACTTTTCAACTGCGTACAGCAGTAATCTCGCGGTGCACGTGCAATGTAAGCACTCGGATGAGAGACGATTCAAATGCGAGTTATGCGAGTACGCCAGTGCGACGCGTAAGACTCTTCTGGTGCATATGAAAACGCATACGAAAGAGAAATCGTTCCGATGCGACCAATGTGACTTTTCTACTTCGTACATGAGTAGCCTTGCAGCGCATAAGAGAAGTCTGCATTCGGAAGAAAAACGTTACAAATGCGACAAATGTGACTACTCTAGTGCGTATACTAATAATGCAACGAGACACGCGAGGGTGCATTCGGGTGAGAAGCCGTTTATATGTGGAGCGTGTGACTATTCTACTGCACAAAGTTGTAGTCTTTCAGCGCATATGAAAACTAAGCATTCAGGAGAAAAGCCGTTGAAATGTGGCGAGTGCGATTTTGTTACTGCGTATGGTTCGTCTCTCTCGAAGCATTTGTTACTACATGCGGggaagaaacaattgaaaagTAACAAACGTGACCATTCTACTGCAATGAAACTTACCGCAAAAAAGCGTAAAAAGAAAAACTGGCAAGAAGAAAGTACTGATGATGAGTAG
Protein Sequence
MSTFEHQSSLKHEQTDADDNFGTLIKKFYCSLCEFGFTKKKYLVNHFKLCKDVENPTDRLGAEPSTVKSEPCVEELEDTQLFDEPTTDIKHEELEISETAISGTTSTPPVHPKTETSEEDEVFDGDRSEKNNRLEKRKRRSEQKPIKCIKCKYVSPSPSDFRRHATTHTNEKPLKCDECDYACAEAYSLRTHMRTHANDRPYKCKICEYASVRSYALTKHMRTHLYQEKPFKCQICDYACTDITKLKEHVRTHTGEKPYECNVCDYSCAHRAYLKVHMRTHTKEKPFKCKVCDYTCAASQAVASHMLTHSGAKPFHCDKCSFATKRHRQLIAHMRTHTKKKQTSLLEKVEKPFKCEECNYAATQRDYLKRHMSTRHSEAKERFKCDQCEYASALRGSLAHHMSTHTKEKPFHCDKCDFSTAYSSNLAVHVQCKHSDERRFKCELCEYASATRKTLLVHMKTHTKEKSFRCDQCDFSTSYMSSLAAHKRSLHSEEKRYKCDKCDYSSAYTNNATRHARVHSGEKPFICGACDYSTAQSCSLSAHMKTKHSGEKPLKCGECDFVTAYGSSLSKHLLLHAGKKQLKSNKRDHSTAMKLTAKKRKKKNWQEESTDDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-