Asti009039.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius sticticus
Gene Symbol
-
Assembly
GCA_963966075.1
Location
OZ014506.1:110763595-110768212[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0052 0.4 12.6 2.4 1 19 28 46 28 48 0.96
2 15 0.00089 0.068 15.1 0.3 1 23 136 158 136 158 0.99
3 15 0.00011 0.0088 17.9 6.3 1 23 167 189 167 189 0.99
4 15 0.045 3.5 9.7 8.6 1 23 196 218 196 218 0.99
5 15 9.5e-06 0.00073 21.3 5.2 1 23 224 246 224 246 0.99
6 15 0.00011 0.0081 18.0 4.8 1 23 252 274 252 274 0.99
7 15 2.9e-05 0.0022 19.7 0.9 1 23 280 302 280 302 0.99
8 15 8.1e-05 0.0062 18.3 0.9 1 23 308 330 308 330 0.99
9 15 2e-05 0.0015 20.3 1.8 1 23 336 358 336 358 0.99
10 15 0.0001 0.0078 18.0 0.0 1 23 364 386 364 386 0.99
11 15 5.4e-05 0.0041 18.9 4.3 1 23 392 414 392 414 0.99
12 15 0.011 0.86 11.6 0.4 1 23 420 442 420 442 0.98
13 15 0.17 13 7.8 0.5 1 23 448 471 448 471 0.97
14 15 0.002 0.16 13.9 0.8 2 23 477 499 476 499 0.95
15 15 0.0046 0.35 12.8 0.4 1 23 507 529 507 529 0.97

Sequence Information

Coding Sequence
ATGAGCACTTTTGAGCACCAATCGTCGTTGAAACATGAAGCGACTGATGCGGATGAGCATTTGGAGAGTTCGATGAAGAAATTTCGTTGCAGTTTGTGTGGGTTCCGGTtcagtaaaaagaaattcttaaCGAACCATTTTGCGTTTTGCAAGGAAGTTGATGATCCCGCTGAAAGGTTGGGTGTGGACGCAGGCAATGTGAAAAGTGAACCTTGTGACGATGAGACTGAAAATACGGAATTAGTTGATGAACCAACaaataaCCTAAAACATGAAGAGGTGGAAATTACCGAAACTGAAATTTCCTGCCAACCAAAAAGAGAAACCACATCCAAAAGAAAACGAATCAGACACAAACCAGGTTCGCAACACAAAAAACAACCGAGAACGCCGCGCCCCAAACCTTTCAAATGCAACCTCTGTGACTATGCTACTACAGAAGCCGAATTCCTAACAGCTCACCTACAAAGACACCCAACCCCGACAGACGGCGACCAATTTAAGTGCACTAGATGCGAAAACTCCTTCGCGAAAGCCCACCATCTCAGACAGCACATGAGAACGCACAAAAACGAGGAAAAGCCGTTTAAATGCGAGCACTGTGACTATGCTACTGTACACAGTTGCTTTTTTACGTTGCACATGAGAAAGCACACCGGGGAACGAGCGTTTAAATGCCACATTTGCGATTATTCTAGTAAAAGAAAAGGGCACCTCGCTATGCATATGAAAACTCACACGAAGGAGAAACCGTTTAAGTGCGACGAGTGTGATTATGCTTGTGCACATCGCTCGAGTCTTACGATGCACAAAAGAACGCATACGAACGAGAAACAGTTCAAATGTGACgtgtgtgactatgcttgtaCGAATCCGGGACGTCTTAGAGTACACGTGAGAACGCATACTATGGAGAAACCTTTCAGGTGCAACGTTTGTGAGTATGCTTGTGCTGACAGGGGCCAACTGACGATGCACGTGCGGACGCATACGGGTGAGAAACCGTTCAAATGCAACATGTGTGACTTTGCTTCTGCACAATGTTCGAACCTCAAAGCGCATATCAGGTCGCATACCGGTGAAAGAAAATATAAGTGCGCCGAATGCAGTTATTCAGCGGCGCAGTCTGCTAATCTTGCGGCGCATATGTTGACGCATACCCGCGAGAAACCGTACAAATGCGAGATATGCGATTATAAAACTGCGCATAGTTTTACTCTAAAAAcccatatgagaaagcatactaAAGAAAAGCCTTTTAAATGCGATGAATGCGATTTTGCAACAGCGTATTCTCCGACGCTCTCGCTGCACAAGCGTCTGCATAAAGGTGAAAAGCCGTTCAAATGTCTGGAATGTGATTATGCCGCTCTGCAGAGAGTCAATCTTGCGCATCATGTGAAAATGAATCATTCGCAGATTACGTTAAAGTGTGACCGATGCGATTATGTTTGTGCGAAGAAAGTTCAGCTTAATACGCACGTCAGAGCCGCGCATGAATGCGTGGAGAAGAAGACGTTTGCATGTGACAAATGCAATCGAGTGTTTGGATGGCGTGCGAATCGTGAGCGTCACATGAAAATTCATAACAAGGGGAAATTGGCAGAAGAAAGTaccgatgatgatgatgactag
Protein Sequence
MSTFEHQSSLKHEATDADEHLESSMKKFRCSLCGFRFSKKKFLTNHFAFCKEVDDPAERLGVDAGNVKSEPCDDETENTELVDEPTNNLKHEEVEITETEISCQPKRETTSKRKRIRHKPGSQHKKQPRTPRPKPFKCNLCDYATTEAEFLTAHLQRHPTPTDGDQFKCTRCENSFAKAHHLRQHMRTHKNEEKPFKCEHCDYATVHSCFFTLHMRKHTGERAFKCHICDYSSKRKGHLAMHMKTHTKEKPFKCDECDYACAHRSSLTMHKRTHTNEKQFKCDVCDYACTNPGRLRVHVRTHTMEKPFRCNVCEYACADRGQLTMHVRTHTGEKPFKCNMCDFASAQCSNLKAHIRSHTGERKYKCAECSYSAAQSANLAAHMLTHTREKPYKCEICDYKTAHSFTLKTHMRKHTKEKPFKCDECDFATAYSPTLSLHKRLHKGEKPFKCLECDYAALQRVNLAHHVKMNHSQITLKCDRCDYVCAKKVQLNTHVRAAHECVEKKTFACDKCNRVFGWRANRERHMKIHNKGKLAEESTDDDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00981444;
90% Identity
-
80% Identity
-