Asti022135.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius sticticus
Gene Symbol
-
Assembly
GCA_963966075.1
Location
OZ014509.1:5550294-5577978[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.032 2.4 10.2 5.1 1 21 26 46 26 47 0.93
2 17 0.0031 0.24 13.3 3.4 1 23 116 138 116 138 0.99
3 17 0.0015 0.12 14.3 2.0 2 23 143 165 143 165 0.97
4 17 0.00045 0.034 16.0 0.6 3 21 199 217 198 218 0.94
5 17 0.002 0.15 14.0 2.1 1 21 285 305 285 306 0.97
6 17 0.0029 0.22 13.4 0.4 1 22 307 328 307 328 0.96
7 17 8.6e-06 0.00066 21.4 4.1 1 23 336 358 336 358 0.99
8 17 0.00036 0.028 16.3 8.3 1 23 364 386 364 386 0.98
9 17 0.0031 0.24 13.3 0.5 1 23 392 414 392 414 0.99
10 17 0.0014 0.11 14.4 3.3 1 23 419 441 419 441 0.97
11 17 0.24 18 7.4 5.4 1 23 447 470 447 470 0.96
12 17 0.0034 0.26 13.2 4.2 1 23 476 498 476 498 0.95
13 17 0.01 0.77 11.7 0.2 1 23 503 525 503 525 0.98
14 17 9.3e-05 0.0071 18.1 1.2 2 23 532 553 531 553 0.97
15 17 3e-05 0.0023 19.7 0.3 1 23 559 581 559 581 0.99
16 17 4.2e-05 0.0032 19.2 1.6 1 23 587 609 587 609 0.98
17 17 0.0012 0.094 14.6 0.9 3 21 652 670 651 671 0.94

Sequence Information

Coding Sequence
ATGGAAAATACTATGACTATTTTTGTGCAGAATGAAGAAGGAAGTGACCTAATTGACGACTCATCTTCAGCCAAACATATTTGCAAAttatgcaggttcaagttcagCCATAAGAAGTATTTAACGAACCATTACAAAGTCTGCAAGAACATACAAAATCCTGCCGAAAGGTTGGGTACAGATACAAGTACTATTAAGAGCGAACATTTTGAAGAGAACGTGCTTGAGAAAGATACAGCAGTTACACAAATCGTTCGTGTAAAGTTAGAACAATTGGATTTCGCTGAATCTACCGACTCTGGCTCTACTGTCGAACCTCCGGAGGCGCAAACTTCAGCCGAACCATTCAAATGCCGCAAGTGTCACTTCACAGCAGAAAACTCAACACAACTTGAAAAACATATAAAAGTACATAAGGGAAGGGCTAAATGTAGATACTGCGACTATACAACTACAAAATATGGTAACGTTGCAAAACATATGAGAAGACGACATCCACAACTCGGACTAACCATGGAAAATGGTATGGCTGTTTCTGTGCAGAACGAAGAAGGAAGTGAACTAATTATAGAATCATCTCCAgccaaaaatatttgcaatttatgcGGATTTAAGTTCAgccaaaaaaagtatttaacgAACCATTACAACGTCTGCAAGAACATAGAAAATCCTGCCGAAAGGTTGGGTACAGATACAACTACTATTAAAAGTGAACATTTTGATGAGAATCTGCTTGAGAAAGACTCAACGACTACACCAATCATTCGCATAAAATGTGAAGAATTGGATTTCACTGAATCTACTGACTCTACTATCGAACCTTTGGAGGCGCAAACACAAGTCGAAGCTTTCAAATGCAGTAAGTGTCACTTCACAGCAGAAAACTCAACACAACTTGAAAAACATATGAGAAACTTTAAATGTAGAAGCTGTGACTATACGACAACAAAACCTGGCAACGTTGCCAAACATATGAGAAGCCGACAATCACAAGAAAGACGATTTCAATGCAGCAAATGTGATTATACTGCTAAAAGAAATGATCATCTTAAACTACATATGAGAACTCATACAGGACAAAAGCCATTTCGTTGCAGCAAATGTGACTATACTAGTTCAAGCAGTTGTCACCTCAAAAGACATATGAGACAGCACGAAGGAAACAAGCCATTCAAATGCACCATCTGTGATTACTCAGCTGGAAACTTAGCAAGAATAACGAGGCATATGAAAACGCACTCAGGTGGAAAACATCATTGTGACAAATGTAACTACGCTACCGCAGATAGATATTCGCTAAACATACATATGAGTACGCATAATACCACgagaatatataaatgcaccCTTTGTGACTTTACTAGTACACAAAGTCATCATGTGACAATGCATAACGAAACTCGACATAAAGGGCAGAAACCATTTCTATGTAAGAAATGTGACTATGCTACCACACACCGTAGTCTCCTTAAAGAACATAAGAGACAGCATGCTGGTAAACAACATAAATGCACCATCTGTGATTATTGGACTGTTAACAAGGGAGACTTGATCCTTCACATCGCTACCCATACGGGAGAAAAAGCATTGAAATGCTCCGAATGTAGTTACGCTTGTGCGGGAAAGTCTGCTCTGACATCCCATATGAGGACTCATACAGACCACAAACCGTTTCAATGTGAGAAATGTGACTATGCTGGTAAAACAAGTGGTGGTCTTCTACAGCATATGAGAACTCATACCGGGGAAAAACCattcaaatgtcaaaaatgcgGCATTGGTTTTTTGAAACGTAGCAATCTCAATCGGCATATGCTCAGGCATACAGGGAAAAAACCATTTCTATGCACCCACGGACTAACCATGGAAAATAGGATGGCTAAGAACGAAGTGAAGAATGAACAAGGCTGTGACCTAATTGACGACTCATCTCCAGCAAAAACTAATATTTGCAAATTATGCGGGTTCAAGTTCAGCAAGCAAAAGTATTTAACGAACCATTACAAGATCTGCAAGAACATAAAAAATCCTGCCGAAAGGTTGGGTACTGCTACAACTACGattaaaaatgaacattttGACAAGAAAGTGCAGACCATTTTGCTTGAGAAAGACGTAACAATTGCACCAATGTAa
Protein Sequence
MENTMTIFVQNEEGSDLIDDSSSAKHICKLCRFKFSHKKYLTNHYKVCKNIQNPAERLGTDTSTIKSEHFEENVLEKDTAVTQIVRVKLEQLDFAESTDSGSTVEPPEAQTSAEPFKCRKCHFTAENSTQLEKHIKVHKGRAKCRYCDYTTTKYGNVAKHMRRRHPQLGLTMENGMAVSVQNEEGSELIIESSPAKNICNLCGFKFSQKKYLTNHYNVCKNIENPAERLGTDTTTIKSEHFDENLLEKDSTTTPIIRIKCEELDFTESTDSTIEPLEAQTQVEAFKCSKCHFTAENSTQLEKHMRNFKCRSCDYTTTKPGNVAKHMRSRQSQERRFQCSKCDYTAKRNDHLKLHMRTHTGQKPFRCSKCDYTSSSSCHLKRHMRQHEGNKPFKCTICDYSAGNLARITRHMKTHSGGKHHCDKCNYATADRYSLNIHMSTHNTTRIYKCTLCDFTSTQSHHVTMHNETRHKGQKPFLCKKCDYATTHRSLLKEHKRQHAGKQHKCTICDYWTVNKGDLILHIATHTGEKALKCSECSYACAGKSALTSHMRTHTDHKPFQCEKCDYAGKTSGGLLQHMRTHTGEKPFKCQKCGIGFLKRSNLNRHMLRHTGKKPFLCTHGLTMENRMAKNEVKNEQGCDLIDDSSPAKTNICKLCGFKFSKQKYLTNHYKICKNIKNPAERLGTATTTIKNEHFDKKVQTILLEKDVTIAPM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-