Asti042979.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius sticticus
Gene Symbol
-
Assembly
GCA_963966075.1
Location
OZ014514.1:34840182-34848949[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.037 2.9 10.0 1.6 1 20 15 34 15 35 0.95
2 24 0.018 1.4 10.9 0.0 2 23 118 139 117 139 0.97
3 24 0.044 3.4 9.7 1.3 1 23 174 196 174 196 0.97
4 24 0.00041 0.031 16.1 0.4 1 23 202 224 202 224 0.99
5 24 0.00029 0.023 16.6 2.5 1 23 337 359 337 359 0.99
6 24 1.3e-05 0.00098 20.9 3.2 1 23 365 387 365 387 0.99
7 24 0.00079 0.06 15.2 2.0 1 23 393 415 393 415 0.98
8 24 0.0082 0.63 12.0 1.2 1 23 421 443 421 443 0.99
9 24 1.1 87 5.3 4.1 1 23 527 550 527 550 0.95
10 24 0.13 9.7 8.3 3.5 1 23 556 578 556 578 0.97
11 24 5.8e-06 0.00044 21.9 1.0 1 23 584 606 584 606 0.99
12 24 0.27 21 7.2 2.4 1 23 690 713 690 713 0.96
13 24 0.018 1.4 10.9 0.2 1 23 719 741 719 741 0.98
14 24 0.00029 0.022 16.6 0.1 1 23 747 769 747 769 0.98
15 24 0.059 4.6 9.3 1.2 1 23 775 797 775 797 0.95
16 24 2.6 2e+02 4.1 1.1 1 23 803 825 803 825 0.85
17 24 0.011 0.87 11.6 3.0 1 23 853 876 853 876 0.97
18 24 0.07 5.4 9.1 1.7 1 23 882 905 882 905 0.97
19 24 0.77 59 5.8 0.4 1 23 915 937 915 937 0.94
20 24 0.00017 0.013 17.3 1.3 1 23 943 965 943 965 0.99
21 24 6.2e-05 0.0048 18.7 0.7 2 23 972 993 971 993 0.98
22 24 0.022 1.7 10.7 8.8 1 23 999 1021 999 1021 0.99
23 24 0.0016 0.12 14.3 3.7 1 23 1027 1049 1027 1049 0.99
24 24 0.00032 0.024 16.5 2.1 1 23 1055 1077 1055 1077 0.99

Sequence Information

Coding Sequence
ATGAGTGACGATAACTTTCCGAGTACTTCCGTCCAGAGAATATTTTCCTGCAGTTTGTGCGGGTTTAAGTTTACCAAGGAAAAGTTTCTAACAAATCACTACGGCTTCTGCAAGGACATCGAAGATCCCGCTGATAGGTTAGGCGCCAACAAAAGCGCTGTTAAAGATGTTCCTCGTACAGAAGAGCTCCCGAATACCGAATTACTTGATGAACATTCAACAACCGACCTGACgtacgatataaaatttgaagagATCGAGTTTACGGAAAATGCCGTTTCTGGTTTGGCTTGTACAGAATCTCGACAAACCGTCGAAGGTCTCAAAACGGATCTTCTAGACGTAGAGGTTAAGTGCGGGAAGTGTAATTATGCAACTGCTGACGCAACCCAACTTGAAGAGCATGCAAAAATACATTCGGAAAATAAGCCGTATAAGTGTAGAATTTGTTGTACTTATACTACTACAAAACTTAAATACCTCAAAGAACATGAAAAGAGGCATGCAGCGAAGATGGTATTTAAGTGTACCGTATGCAAATATTCTGCCGCAAAACAGTGTACGCTTGCAGAGCATATGAGtgcgcatacaggagagaaacggTTTCAATGCGGCATATGTGACTATGCTACTCCGATGCGTGGTACTCTTAAAACTCACAGGAGAACTCACTATGGAGACACGTCTGAATTCGAGAATACTGAATTACTTGACGGGCAATCAACAACTGATATGACatatgtCGAAAAAGTTGAAGAGCGCGAGTTCACTGAAAATACTATTTTCGGTTCTGCTTGTGCGGAATCTCCACAACCCATTGATAGTCTGAACGCGGAGACTCCAGAGGAAAAGTGTAACGATGTAACTGCCGAAGCAACCCAATTGCAAGAGCACGAGAAAGTGCTTACGGAACCTAAGCTATTCAAGTGTGAAATGTGTGCTACGTATACCACTACAAAGCTTAAATACCTGAAAGAACATGAAAAAAGACATGCAGCGAACAAGTCTTTCAAGTGTACCGTATGTAAATATGCTGCTGTAAGCAAACATACGCTTGCAaggcatatgagaaagcatagaGGCGAGAAACCGTATCAGTGTAACGTTTGCGGCAATGCTTTTTTCAGACACTCGACCTTGACGCGCCACATGACTACTCATACAGGTGAGAGACGACATAAATGCACTATGTGTCGGTATGCTAGCGCAGATCGCGCTACCCTTAAACAACATATACGGACGCATACCGGAGAAAAACCTTATAAATGCAggaaatgtgactatgcttctgCATGGCGTGCTAATTTTAGAAATCACATGAGATCTCACAATGGAGATGTGCCTGAGCTCCAGAATACTGGTTTACTCGACAGGAAGTTAAAAGCTGACGTAACaTATGGCGAAAAAGTTGAAGAGCGCGAGTTTACTGAAAATTCTATTTTCGGATCTGTTTGTCCGGAATCTCCACAACCTATTGATAGTCCGAACGCGGAGGCTCCAGAGGAAAAGTGTAATGATGTAACTGCTGAAGCAACCCAATTCCAAGAGCATGAGAAAGTGCTTACAGAACCTAAGCTATTCAAGTGTAACATTTGTACTACATATACCACTACAAAACGTAAATACTTGAAAGAACACGAAAAAAGACATGCAGTGGACaagccatttaaatgtaccttaTGCAAATATTCTGCTGTACATAAATGTACGCTCGCAGAGCATATGAGtgcgcatacaggagagaaacgatTTAAATGCGGCCTATGTGACTATGCTACTCCAAGGCGTAGTACTCTTAAAAATCACATGAGAACTCACTATGGAGAGCAGCTTGAACTCGAGAATACTGAATTACTTGACGGGCAATCAACAACTGATCTGACatatgtCGAAAAAGTGGAAGAGCGCGAGTTCACTGAAAATACTATTCTCGGTTCTGCTTTTGCGGAATCTCCACAACCTATTGATAGTCTGAACGCGGAGACTCCAGACGAAAAGTGTAACGATGTAACTGCCGAAGCAACCCAATTGCAAGAGCACGAGAAAGTGCCTATCGGACCTAAGGTATACAAGTGTAACATTTGTACTACATATACCACTACAAACCGTATATACCTGAAAAAACACGAAGAAAGACATGCGGCGGACAAGCCGTTCAAGTGCGCCTTATGCAAATATTCGGCTGTAAACAAATGGACGCTCGGGGAGCATATGAGATGGCATACAGGGGAGAAACGATATCAATGTGACGTGTGTGGCATTGCTTTTTTTACCCTCTCTATTCTAACACGCCACATGACCGTTCATACCGGTGAGAAGCGATTTCTCTGCTCGGTATGCGGCTTTGCTACTGCGTGCAACGCCATGCTTAAACGGCATATCCGGAAGCACACGGGCGAAAAAGCATTCAAATGCAGCGAATGTGATTATTCTTCTGCATGGCGCACTAATCATGCaaatcacataaaaattcaCAATGGAGACTCGAGACCAACTTCATTAATAGAAGAACATGCGAAGGAGGAGTTACCCTCACCGATTACGGGAGAAAAATCATTTAAATGTTCAGTTTGTGACTATTCTAGTCAACAACGTCACGAACTCACACTACACGTACAGAGAAAGCACGCAGAAGAGAAAACGTTTGTTTGCGCTCAGTGCGACAAAGCTTTTGCGTGCGGTACCTATCTTAAGACGCATATAAAGAGAACGCATACGATGGGAACCCGCGCTGAACGCGTATTTGCATGCAAGATTTGTGAATTTTCGACTAAAGTCCTGCTAAAATTTAGAATTCACATGGCCGATCATACAGGAAAGGAAACGTTTAAATGCGCTGTCTGTCACTTGGTTGTTACACATCGTTCCGCTCTTGTAATTCATATGAGGTCGCACACCGGCGAGAAACCAGTTAAATGTGATATGTGTGAATACTCGACTACGACTTCATCGATGCTAAAGAGCCACATGATAACGCATACACGGGAGAGGTTGTTCAAATGCGACGTATGCGATAAAACGTTTTTACACAGGTGTCATCGAACGGCGCACATGAGAACGCATACCGGGGAGAAACCGTATCAGTGCAAGGTGTGTGAATATAagtgtgcacttcatacggcACTCGCGaggcatatgagaacacatacgGGTGAGAAACCTTATAGATGTTCCGTCTGTGACTATGCTAGTACGACCGGCTGTAATCTTAAAGTGCATATGAAAACGCATAATTGA
Protein Sequence
MSDDNFPSTSVQRIFSCSLCGFKFTKEKFLTNHYGFCKDIEDPADRLGANKSAVKDVPRTEELPNTELLDEHSTTDLTYDIKFEEIEFTENAVSGLACTESRQTVEGLKTDLLDVEVKCGKCNYATADATQLEEHAKIHSENKPYKCRICCTYTTTKLKYLKEHEKRHAAKMVFKCTVCKYSAAKQCTLAEHMSAHTGEKRFQCGICDYATPMRGTLKTHRRTHYGDTSEFENTELLDGQSTTDMTYVEKVEEREFTENTIFGSACAESPQPIDSLNAETPEEKCNDVTAEATQLQEHEKVLTEPKLFKCEMCATYTTTKLKYLKEHEKRHAANKSFKCTVCKYAAVSKHTLARHMRKHRGEKPYQCNVCGNAFFRHSTLTRHMTTHTGERRHKCTMCRYASADRATLKQHIRTHTGEKPYKCRKCDYASAWRANFRNHMRSHNGDVPELQNTGLLDRKLKADVTYGEKVEEREFTENSIFGSVCPESPQPIDSPNAEAPEEKCNDVTAEATQFQEHEKVLTEPKLFKCNICTTYTTTKRKYLKEHEKRHAVDKPFKCTLCKYSAVHKCTLAEHMSAHTGEKRFKCGLCDYATPRRSTLKNHMRTHYGEQLELENTELLDGQSTTDLTYVEKVEEREFTENTILGSAFAESPQPIDSLNAETPDEKCNDVTAEATQLQEHEKVPIGPKVYKCNICTTYTTTNRIYLKKHEERHAADKPFKCALCKYSAVNKWTLGEHMRWHTGEKRYQCDVCGIAFFTLSILTRHMTVHTGEKRFLCSVCGFATACNAMLKRHIRKHTGEKAFKCSECDYSSAWRTNHANHIKIHNGDSRPTSLIEEHAKEELPSPITGEKSFKCSVCDYSSQQRHELTLHVQRKHAEEKTFVCAQCDKAFACGTYLKTHIKRTHTMGTRAERVFACKICEFSTKVLLKFRIHMADHTGKETFKCAVCHLVVTHRSALVIHMRSHTGEKPVKCDMCEYSTTTSSMLKSHMITHTRERLFKCDVCDKTFLHRCHRTAHMRTHTGEKPYQCKVCEYKCALHTALARHMRTHTGEKPYRCSVCDYASTTGCNLKVHMKTHN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-