Asti043094.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius sticticus
Gene Symbol
RPH1
Assembly
GCA_963966075.1
Location
OZ014514.1:36994330-37006096[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.036 2.8 10.0 3.0 1 23 95 117 95 117 0.97
2 18 5.2e-05 0.004 18.9 4.1 1 23 123 145 123 145 0.98
3 18 0.0016 0.13 14.2 6.9 2 23 268 290 267 290 0.97
4 18 4.1e-07 3.2e-05 25.6 3.5 1 23 296 319 296 319 0.97
5 18 0.016 1.2 11.1 3.2 1 23 329 351 329 351 0.98
6 18 0.11 8.8 8.4 0.5 5 23 368 386 366 386 0.96
7 18 0.038 2.9 9.9 3.9 1 23 394 416 394 416 0.99
8 18 2.2e-05 0.0017 20.1 1.8 1 23 422 444 422 444 0.98
9 18 3.7e-07 2.8e-05 25.7 3.8 1 23 450 472 450 472 0.98
10 18 2.2e-06 0.00017 23.3 0.9 2 23 479 501 478 501 0.96
11 18 0.36 28 6.9 4.0 1 23 507 529 507 529 0.98
12 18 1.4 1e+02 5.0 2.9 1 23 540 566 540 566 0.92
13 18 0.038 2.9 9.9 3.9 1 23 574 596 574 596 0.99
14 18 2.2e-05 0.0017 20.1 1.8 1 23 602 624 602 624 0.98
15 18 3.7e-07 2.8e-05 25.7 3.8 1 23 630 652 630 652 0.98
16 18 2.2e-06 0.00017 23.3 0.9 2 23 659 681 658 681 0.96
17 18 0.36 28 6.9 4.0 1 23 687 709 687 709 0.98
18 18 0.031 2.4 10.2 2.1 1 23 720 743 720 743 0.97

Sequence Information

Coding Sequence
ATGTCGGATATATCTATAGAATATAACTATAATGCCGATCTTTTGGAACCAAGCATGAATGTTAAACtagaaataaaacaagaatTTGAAGCTTGGTCTGACCAAGCTTGTTTGATAGAATGTGGAACAAACCTACTTCCGAGCGATGATGTCAAAATTGAAGTCGAAGACACAGTTGTACAAATTGGTATCAAAGCAGAAATGCCTGCTTCTGAAGaagtcaaaattaacaatactccAAAAGCGGAAGAGGATTTGAAAACACGATCAAAACCATTGAAATACATATGCAAACACTGCGGTTACAAGACTAACCTAAAAACCACATATGAAAATCATCTCACAATTCACTCTGATGATCGTCCATTCACCTGTCACAAGTGCAAGAAAAGCTTTAAACGGAAGGACGCCATTATCGACCATCTCAATAGACACGATGTCAATAAACCGAAAAGATACCTATGCGAAAAATGCACGTACAGTACAAATTTTTGGAGTTCTTTTGACAGTGGAGATTTGCAACCAGATGTGCAAGTTAAAACAGAATGCAATATTAATAGCACCGAAAATAGAGACGAGACTGACTCAAACTTCTTAACAAGCGATGTAAAAATTGAATTGGAAGACACTTGTGTAAAGTCGGAAGTTTGCACTGGTTATTTAGATTCTTATTCCTTGAATTGGGAACCCAATAAATACATAGtATTCGATTGCCCTGTACTAAATCCCGAGGAAGAATTGGATCAAAATTCATTCACACAACAAGAAAACGTTGACGGCACTAAACTTCTAACGCAGAAGAAGTGCAACATATGTTCGTACGAATGCAAAACAAACAGCAAGTTGAACAGGCATCACCGCACCGTGCATTCTGATAATCGACCTCACAAATGCGAGATCTGCGGAAAGACATTCAAAGAAAAAGACCAGTTGAACCAACACATGAAAAAAACACACTCGAAGATAAACATGGAACTTTGTCCGTTTATTTGCGAGATATGCAATCAAAGGTACCGCAAGGAACATACGTTAGATTTACACAAAAAGACCCACGCTAACGATACGGAAGGAATACAAGAAAAACATTCGTTTAAAAGTACAATTTGTTCGAAAGAATATACGAAAAAATCTACGTTTGACGAACATTTAAGCACACACGATGAAAATCCAAATTGGAAATATAAATGCGGCGAATGCTCTTATCATTCAAACAACATCAGAAAATTAAAACGACACTTGACAACCCACAAAACTGAATATCCTTTTACCTGTGAAAACTGCGGTCGGACATTTAAAGAAGAACGCCAGTTAGAAAAGCATAGGAAACTCCACGATCCAATAAGAGATTTCCGTTGCGAGCACTGCGGGAAGTCCTTCTACACAAATTATAACCTACAACTGCATCTTCGGTTGCATTCCGATGAGAAAACGTTAAAATGTCCCAAATGCGATGAGACGTTTAGTAGGAAAGATTATTTGAGTCAACACATACTGAGGCAGCATAGAGACGCAAAGAAGTATAAATGCGATCggtgtgattatgctagtgcgTATTGTAATACTATGCGCAGGCATAAATTGAGACATGATAAGGTTAAGTCGTTGACAGATATGAAACATAAGTGTGATTTTTGCGGTTATGCCAGTAAACGAGAATATACGAAAAAATCTACGTTTGACGAACATTTAAGCACACACGATGAAAATCCAAATTGGAAATATAAATGCGGCGAATGCTCTTATCATTCAAACAACATCAGAAAATTAAAACGACACTTGACAACCCACAAAACTGAATATCCTTTTACCTGTGAAAACTGCGGTCGGACATTTAAAGAAGAACGCCAGTTAGAAAAGCATAGGAAACTCCACGATCCAATAAGAGATTTCCGTTGCGAGCACTGCGGGAAGTCCTTCTACACAAATTATAACCTACAACTGCATCTTCGGTTGCATTCCGATGAGAAAACGTTAAAATGTCCCAAATGCGATGAGACGTTTAGTAGGAAAGATTATTTGAGTCAACACATACTGAGGCAGCATAGAGACGCAAAGAAGTATAAATGCGATCggtgtgattatgctagtgcgTATTGTAATACTATGCGCAGGCATAAATTGAGACATGATAAGGTTAAGTCGTTGACAGATATGAAACATAAGTGTGATTTTTGCGGTTATGCCAGTAAACGAGGTTGGAATGTGAAGTCGCATGTTCGAAGGAAACATAAGGATGTTGTGAATACAGCGTGA
Protein Sequence
MSDISIEYNYNADLLEPSMNVKLEIKQEFEAWSDQACLIECGTNLLPSDDVKIEVEDTVVQIGIKAEMPASEEVKINNTPKAEEDLKTRSKPLKYICKHCGYKTNLKTTYENHLTIHSDDRPFTCHKCKKSFKRKDAIIDHLNRHDVNKPKRYLCEKCTYSTNFWSSFDSGDLQPDVQVKTECNINSTENRDETDSNFLTSDVKIELEDTCVKSEVCTGYLDSYSLNWEPNKYIVFDCPVLNPEEELDQNSFTQQENVDGTKLLTQKKCNICSYECKTNSKLNRHHRTVHSDNRPHKCEICGKTFKEKDQLNQHMKKTHSKINMELCPFICEICNQRYRKEHTLDLHKKTHANDTEGIQEKHSFKSTICSKEYTKKSTFDEHLSTHDENPNWKYKCGECSYHSNNIRKLKRHLTTHKTEYPFTCENCGRTFKEERQLEKHRKLHDPIRDFRCEHCGKSFYTNYNLQLHLRLHSDEKTLKCPKCDETFSRKDYLSQHILRQHRDAKKYKCDRCDYASAYCNTMRRHKLRHDKVKSLTDMKHKCDFCGYASKREYTKKSTFDEHLSTHDENPNWKYKCGECSYHSNNIRKLKRHLTTHKTEYPFTCENCGRTFKEERQLEKHRKLHDPIRDFRCEHCGKSFYTNYNLQLHLRLHSDEKTLKCPKCDETFSRKDYLSQHILRQHRDAKKYKCDRCDYASAYCNTMRRHKLRHDKVKSLTDMKHKCDFCGYASKRGWNVKSHVRRKHKDVVNTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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