Asti039936.1
Basic Information
- Insect
- Aphodius sticticus
- Gene Symbol
- -
- Assembly
- GCA_963966075.1
- Location
- OZ014514.1:9739257-9740582[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00071 0.054 15.4 3.5 1 23 80 103 80 103 0.98 2 13 0.087 6.6 8.8 0.3 1 23 106 128 106 128 0.93 3 13 0.0002 0.015 17.1 3.0 1 23 133 155 133 155 0.98 4 13 0.00013 0.01 17.6 0.1 1 23 161 183 161 183 0.98 5 13 0.0036 0.27 13.2 7.5 1 23 189 211 189 211 0.99 6 13 0.00017 0.013 17.3 4.5 1 23 217 239 217 239 0.99 7 13 3.3e-05 0.0026 19.5 2.0 1 23 245 267 245 267 0.99 8 13 3.2e-05 0.0025 19.6 2.4 1 23 273 295 273 295 0.99 9 13 1.7e-05 0.0013 20.5 0.3 1 23 301 323 301 323 0.99 10 13 8.5e-06 0.00065 21.4 0.8 1 23 329 351 329 351 0.98 11 13 5.1e-07 4e-05 25.2 1.9 1 23 357 379 357 379 0.99 12 13 0.00015 0.011 17.5 0.6 1 23 385 407 385 407 0.98 13 13 1.4e-05 0.0011 20.8 0.6 1 23 413 435 413 435 0.99
Sequence Information
- Coding Sequence
- atgattttttttacacgaGATACGTTATTGTATCAGCTCTTATTTTTCAGATACGATGTAAAACTGGAATTCGTAGAAACTAGTATTTCGGAATCTACTCTTACAGTACCTGGACAATCCATCAAACCTAAGGCAGAAACACCTTTGCAGGTCTTCAGATTAATCGACCACGAATACGCAACTACGCTAAAAACGCAACCCGAAAACCACACAAAAGAAGACAAAGAAGAGAAGCAATTCAAGTGCAACCTCTGTAACTATGCTACCACTCAGCGTAGGTTCCTAAAAGCGCATAGGCGTCGACGACATAAAACCTTCGACTGTCGGCTCTGCGACTTCTCAACCGTCACCTCCGAAGCATTCGAAAACCACAAGGCAGCGCATCCGAAAAAGAAATTTATGTGCGATTCGTGCGGATTTATCTGCTCAACGACGTCCAACCTGAAACTGCATATGCAAAAGCATACTGGAGAGAGGCCCTTCAAATGTTCGATTTGTGATTATGCTGCTGCACAACGCATCCTTCTCACGCGTCATATGAAGGctcatacaggcgagaaacaaTTTAAATGCGACTTATGCATGTACAGAACTAGGCATAGGTCTCATCTCAAATTGCATATGAGAACTCATACCGGAGAGCGTCCGTTTAAGTGCCTAATATGCGGCCATGCTTTCCCACAACGCTGTCATCTCGATGTGCATATCCGGAGGCATACCGGAGAATCGCTGTTTAAATGTTCTAGGTGTGATTATTCTACTACGCAACGAGCTACCCTTACGGTGCATTTGAGAAGGCATACGGGGGAGAAGCCATACAAATGTTCGGTTTGTGATTTTGCTTGTGCACAACGCACTGGTCTCAGGCAGCATATGAGAAGGCATACGGGAGAGAAGCCATACAAATGTTCGGTTTGTGACTATGCTTCTGCACAACGGGCTGCCCTGAAGCAGCATATGAGACAGCATACTGGAGAGAAGCCATTCAAGTGTTCGGTTTGTGATTATTCTAGTGCACAAAGTGCATCTCTAAAATCACATATGAGACAGCATACTGGGGAGAAGCCGTTTAAATGTTCGATTTGTGATTATGTTTGTACGCAAGCTTCTAGTCTTATGGTGCATATGAGAAGACATACAGGTGAGAAGCCATTTGTATGTGAAGTATGCGGTTTTGCTTGTCGGCAGAGATCTGGGATTGTAGTCCATATGAGGAAGCATACTGGAGAGAAGCCGTTTCAGTGCAACATCTGCGATCGTGCGTATAGTTATGCATCCAGTTTAGAATTCCATATGAGGAGCCATAATCGAGAGAAGCTAGTGTGA
- Protein Sequence
- MIFFTRDTLLYQLLFFRYDVKLEFVETSISESTLTVPGQSIKPKAETPLQVFRLIDHEYATTLKTQPENHTKEDKEEKQFKCNLCNYATTQRRFLKAHRRRRHKTFDCRLCDFSTVTSEAFENHKAAHPKKKFMCDSCGFICSTTSNLKLHMQKHTGERPFKCSICDYAAAQRILLTRHMKAHTGEKQFKCDLCMYRTRHRSHLKLHMRTHTGERPFKCLICGHAFPQRCHLDVHIRRHTGESLFKCSRCDYSTTQRATLTVHLRRHTGEKPYKCSVCDFACAQRTGLRQHMRRHTGEKPYKCSVCDYASAQRAALKQHMRQHTGEKPFKCSVCDYSSAQSASLKSHMRQHTGEKPFKCSICDYVCTQASSLMVHMRRHTGEKPFVCEVCGFACRQRSGIVVHMRKHTGEKPFQCNICDRAYSYASSLEFHMRSHNREKLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -