Asti042992.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius sticticus
Gene Symbol
-
Assembly
GCA_963966075.1
Location
OZ014514.1:34975849-34978611[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 5.8e-06 0.00044 21.9 1.1 1 23 85 107 85 107 0.98
2 16 0.0052 0.4 12.7 0.2 1 23 113 136 113 136 0.97
3 16 0.025 1.9 10.5 4.2 1 23 142 164 142 164 0.98
4 16 0.00085 0.066 15.1 2.4 1 23 277 299 277 299 0.98
5 16 5e-05 0.0038 19.0 0.1 2 23 306 327 305 327 0.97
6 16 0.00053 0.04 15.8 1.6 1 23 333 355 333 355 0.99
7 16 0.01 0.76 11.8 4.3 1 23 385 407 385 407 0.98
8 16 7.3e-06 0.00056 21.6 2.4 1 23 413 435 413 435 0.97
9 16 0.0033 0.25 13.3 2.0 6 23 446 463 443 463 0.98
10 16 0.0028 0.22 13.5 0.8 1 23 469 491 469 491 0.99
11 16 0.0011 0.088 14.7 4.2 1 23 526 548 526 548 0.99
12 16 5.5e-05 0.0042 18.9 0.9 1 23 554 576 554 576 0.99
13 16 0.00012 0.0093 17.8 0.1 1 23 582 604 582 604 0.99
14 16 0.11 8.6 8.5 3.9 1 23 610 632 610 632 0.97
15 16 0.00015 0.012 17.5 0.8 1 23 638 660 638 660 0.96
16 16 1.9e-05 0.0015 20.3 1.0 1 23 666 688 666 688 0.99

Sequence Information

Coding Sequence
ATGGAATGTGACGAAAGTGTCGATCGTgcaaactgcgatagttcactACACGAACAACGCTCTGAAGACCCTGTGGGAATAGAACCACCAGAGGATCTATTGGAAATCATCGACGTTGATGACACAATTGCACAAGATGATGAGCGGGAGAAACTAGGAGTGAAAccttacaaatgtaacatatcTAGCCCTGCTTGTGCAACAAGTGCTAGTATtactgagcacttgagaacgcatacaggaaaGAAGCAATTTCAGTGTAGCGAGTGTGATCATGTTAGTTCAAATCGTAGTGCTCTTACAGCCCATATGAGAAACCATTCAGGCAAAAAACCATTCCAATGCTCCGTATGTGAATATTCCGCTGCACAAGCTGGAAGTCTTCGACAACATCTGACACGACGACATAAGATAAAGAGGCCACATAAATGCGTGGATTGTGACTTTTGGTTTGCTAAATCCTCCACTCTTAAAAAACATAAGAAAAGGCATGCAAGAGTGAAATTAGTTAAACGCACTGTTTGTGACTTTGCCACCGTAACCTCAAAGCATCTTGAAAATCCGAATAAAATGCAGAAAATGGGAAGTGACGGAAGTACCAATCCTgcaaactgcgatagttcactACACGAACAACGCTCTGAAGGCCCTGTGGGAGAACCAGCTGCGGATCTATTGGAAATCATCGACCATGACGACACAATTGCACAAGATGACAAGCGGATGCAATTAGTTGTGAAACCTCACAAATGTAACATATCCAGCCCTGCGTGTGTAACAAGTGTCAGTGTTACTGAGAACTTGAGATCGCATACAGGAAAGATGCAATTTCAGTGTGGTGAGTGTGATTATTTCTGTGCACAACGTTGTGCTCTTACAGCCCATATAAGAGAGCATACAAGAAGAAAACCAGTCCAATGCCCTGTATGTGAATATTCTGCTGCACAAGCTGGAAATCTTCGACGACATATGAGACAACATAATATTAACAAGCCATACAAATGTGTGGATTGTGACTTTGTGTGTGCTAAATACGCCACTCTTCAAAACCATGTGCGAACGCATACAAAAGCGATTGTTTGTGACATTGCAACCGTGACCTCGGAGCATCTTCAAATTCCCAACAAAACGCACATCAAACCGAAACCGTTCTACATATGCCCAGTTTGTGAATATTCTTGTACGAAAAAGTCTATTCTTCACAACCATATGAAAAGGCATGCAAAAGTGAAACTATTTCAGTGCAGCAAGTGTGATTATTCTTGTGCAAGACGTAGTGATCTTACAAGGCATATGGGAGTACATGCAGGTATAAGACCACTTCACTGTATAGCTTGTGACTATGCTTGTACTAGACGGTTTAATCTTCAACAGCATATGAAAACGCATGCAGAAGAGACGTTATTTAAATGCCGCCTTTGTGACTATTTCACCACGGTCTTGGAGGACCTTGAAATTCACACCAGAACTCACAACGAACAGACACCATTTACGTACCAAGATTCTTGCACGAAATGGGCATCAATGCTGGTCTCGATGCAGCCGCAAATGCACACCAGAATGCATATCAAtcattttaaatgcaaattctGTGCCTATGCTAGTACACGTCGTGGATGTCTTAAACGCCATATGAGAGTGCATTCGGTAGAACAGCCGTTTAAATGTACAATTTGCGACTATGCTTCTCAATATCGTAGTAGTCTAATACAGCATATCAGAACGCATTCCGGTGAGAAACCTTTTAAATGTGATGTGTGTGCCTATTCTGGTACACAAAAAGCTAATCTTGAAGTGCATATGCTGACGCATGCAGGGGCGAAGCTCCATAAATGTAAACTATGCGATTATGTTAGTTCATTCCATAATAGCCTGAGATGGCATGAGGTAACGCATATAGTAGCGcagccatttttatgcaacatgtGTAACTATGCTGCTGCACAGCGTAGTAAACTAACCAGACATATGAGAAGCCATACAGGACAGACACCATTTCAATGTTCCTTATGCAGCTATGCGGGTGCTCAGAAATCTTACCTTACACGTCATATGAGAACACATTCAAAAGAAAAACCACCTAAACAAACCATATTAAGCAAACTTATAATGATCAGCAGACCAAGCGTAAGCACCGTAACATCTGCGGGAGACCTTCAACTAACAACTGCGGTGGAGGAAGATCGCAATCCAGTGCAGAatatattgaagaaatgcaacgTCATAGTAACGTCAATCAGGAATAATCAAGGTAATATAGATTACATAATTGAAGACCAACCTGCGAACCAGGTCGAGAAAGAAGTAAGTATGGATGAAATGAGACAAACGATGAACCAGAGTGATGGTATGAGAGATGAATTACCGAAAGACAAAGAAGTGGCAGAGAACTGTACGGAAGTATCTCAAATTAGGAACGTAACTGAAGATGATATTCGTGACATACATGATACAAATGTAGTAGATAGTAGGAACGATGTGAAGGTAGATATAACCAAGGTGAAGGTTGAAGTAACTACGGGTGAAATAGCACCGACGATGAACCAGAACGATGAACTGAGGTATGAAATAATGAACACTAAAGAAGAGATAAAGAAGTGTAAGAAAGAATTGATACTGGAGATAAGGCAAAAGATGGATGCGTTTGCTGCAGTGGATGCTCTACAGAAGGAATTGGACGAAAGGGAGATATTATGGATGGAGGAGAAAAGGAAGCTTGAGGATcgtataaataaattagaaaatcaAGAAACCGAGAAATAA
Protein Sequence
MECDESVDRANCDSSLHEQRSEDPVGIEPPEDLLEIIDVDDTIAQDDEREKLGVKPYKCNISSPACATSASITEHLRTHTGKKQFQCSECDHVSSNRSALTAHMRNHSGKKPFQCSVCEYSAAQAGSLRQHLTRRHKIKRPHKCVDCDFWFAKSSTLKKHKKRHARVKLVKRTVCDFATVTSKHLENPNKMQKMGSDGSTNPANCDSSLHEQRSEGPVGEPAADLLEIIDHDDTIAQDDKRMQLVVKPHKCNISSPACVTSVSVTENLRSHTGKMQFQCGECDYFCAQRCALTAHIREHTRRKPVQCPVCEYSAAQAGNLRRHMRQHNINKPYKCVDCDFVCAKYATLQNHVRTHTKAIVCDIATVTSEHLQIPNKTHIKPKPFYICPVCEYSCTKKSILHNHMKRHAKVKLFQCSKCDYSCARRSDLTRHMGVHAGIRPLHCIACDYACTRRFNLQQHMKTHAEETLFKCRLCDYFTTVLEDLEIHTRTHNEQTPFTYQDSCTKWASMLVSMQPQMHTRMHINHFKCKFCAYASTRRGCLKRHMRVHSVEQPFKCTICDYASQYRSSLIQHIRTHSGEKPFKCDVCAYSGTQKANLEVHMLTHAGAKLHKCKLCDYVSSFHNSLRWHEVTHIVAQPFLCNMCNYAAAQRSKLTRHMRSHTGQTPFQCSLCSYAGAQKSYLTRHMRTHSKEKPPKQTILSKLIMISRPSVSTVTSAGDLQLTTAVEEDRNPVQNILKKCNVIVTSIRNNQGNIDYIIEDQPANQVEKEVSMDEMRQTMNQSDGMRDELPKDKEVAENCTEVSQIRNVTEDDIRDIHDTNVVDSRNDVKVDITKVKVEVTTGEIAPTMNQNDELRYEIMNTKEEIKKCKKELILEIRQKMDAFAAVDALQKELDEREILWMEEKRKLEDRINKLENQETEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-