Basic Information

Insect: Aphodius sticticus
Gene Symbol: -
Assembly: GCA_963966075.1
Location: OZ014509.1:32525188-32534301[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.4 1e+02 5.0 0.1 5 19 134 148 132 151 0.91

2 13 0.00011 0.0088 17.9 3.0 1 23 165 187 165 188 0.96

3 13 0.00054 0.041 15.7 1.1 3 23 193 213 191 213 0.97

4 13 3.5e-05 0.0027 19.5 1.8 1 23 219 241 219 241 0.98

5 13 0.0024 0.19 13.7 5.1 3 23 249 269 247 269 0.96

6 13 0.00022 0.017 16.9 0.0 3 23 277 297 275 297 0.95

7 13 5.6e-06 0.00043 22.0 1.6 1 23 303 325 303 325 0.98

8 13 3e-06 0.00023 22.8 0.1 1 23 331 353 331 353 0.98

9 13 7.7e-05 0.0059 18.4 0.4 1 23 359 381 359 381 0.97

10 13 2.4e-06 0.00019 23.1 0.2 1 23 387 409 387 409 0.99

11 13 7.8e-06 0.0006 21.5 2.0 1 23 415 437 415 437 0.98

12 13 0.0016 0.12 14.2 4.6 1 23 443 465 443 465 0.98

13 13 6.9e-06 0.00053 21.7 1.0 1 23 471 493 471 493 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.4	1e+02	5.0	0.1	5	19	134	148	132	151	0.91
2	13	0.00011	0.0088	17.9	3.0	1	23	165	187	165	188	0.96
3	13	0.00054	0.041	15.7	1.1	3	23	193	213	191	213	0.97
4	13	3.5e-05	0.0027	19.5	1.8	1	23	219	241	219	241	0.98
5	13	0.0024	0.19	13.7	5.1	3	23	249	269	247	269	0.96
6	13	0.00022	0.017	16.9	0.0	3	23	277	297	275	297	0.95
7	13	5.6e-06	0.00043	22.0	1.6	1	23	303	325	303	325	0.98
8	13	3e-06	0.00023	22.8	0.1	1	23	331	353	331	353	0.98
9	13	7.7e-05	0.0059	18.4	0.4	1	23	359	381	359	381	0.97
10	13	2.4e-06	0.00019	23.1	0.2	1	23	387	409	387	409	0.99
11	13	7.8e-06	0.0006	21.5	2.0	1	23	415	437	415	437	0.98
12	13	0.0016	0.12	14.2	4.6	1	23	443	465	443	465	0.98
13	13	6.9e-06	0.00053	21.7	1.0	1	23	471	493	471	493	0.99

Sequence Information

Coding Sequence: ATGGAAGAAAATATCACGGTAATTACAAATATAAACCGACTATGCCGCACTTGTCTTTCAGAAAAAAACGAACAGGAACTAAATTTTGTGTTTGAATGCTCAATAGATGTAATGCTCAATTCGTTGGCAGGGATTGAGGTAGAAAAAGAGGATAACTTGCCGAACTATATTTGTAAAGAATGTACCGTCCAATTAGATTTAGCGTACGCTTTTAAACTacaatgtcagaaatttgatGCACAATTACGTGAGATATTTGTACAAAACAGCAATGAAGAAGAAAGGACGctcattataaatttaaatattagcTCACTTGAGGAAGGGTTAAAAAGTGTCAGTGAAGAAATCGAAAATAAAGAAATTGTTGAGAATTATAAATCAGAGgagGAAAATGACAACTGTGATAGATCTTGTACAAACGATAGTGAACTTTCAGACCATGAGGACGTAGAAATAAATGACGCGGAAGAAAATGACACCGCCATAAAGTTTGAGTGTACTACGtgtaaaaaacaatttaaatcagCAAGTGTTTTAAAAGTACATCAAGCTAAGCATCACAGGAAAGTTCATTGTGAAGTTTGCAGAAAAGAATTTTCATtggTACGACAGTTAAAAGCTCATATGAAAATTCATTCCGATTACAAACCTTTCACATGCAATCTCTGCCCTAAGTCGTTTTCCTGTGCAGGAAGTTTAAACAAGCACTTACGAATTCACGGTGGAGAACGGAAGCACCTTTGTATGCAATGCGGCAAGCGATTTTACGAACACGGACATTTAGTAATTCACCTAAGAACACATAGTGGAGAAAAACCGATAATATGCAGCATCTGCGGAAAAGGTTTTGCAGATCCTAGAGGGTTGGTTGCACATAATAAGATTCACACTGGAGAGAGAAACTACGAATGCAATAGTTGCGGTAAACGGTTTGCTCATTCCTTCGCACTCACAGCACACAAGCGGATTCATACGGGCGAAAAACCATATATTTGCTCAATATGTGGAGCAGCATTTGGTACATCTTCTTATTTGACAATTCACACAAGAACTCACACTCAAGAGAGGCCATATAAGTGTGAAACCTGTCCAAAaGCATTCGTAAGTAAATGTGCTCTGGCCGCTCACAACATGATCCATACCGGGGAAAAGAAGTACCAATGcttcatttgtggtaaacgaACAGGACGTGCAGCAGATCTCACAATACACATGCGATCGCATACTGGTGAAAAACCGTACTGTTGTGATCAGTGTCCAAAAAGATATCCCACGTCGAGTAATCTTGCTGCACACAAGAAAACCCATCTAGGTATCCGGGAGCACGTTTGCACAATATGCAACAAAGCATTCGGAGACACAAGAACATTAAAATGTCATATGCGCacgcatacaggagaaaaaCCTTACGTCTGTCATATCTGCGGGAGTCGTTATACACAATCTGGCCAACTAGCTGCACATCGGAAGACCCACCAGCAAGAAAcggtttaa
Protein Sequence: MEENITVITNINRLCRTCLSEKNEQELNFVFECSIDVMLNSLAGIEVEKEDNLPNYICKECTVQLDLAYAFKLQCQKFDAQLREIFVQNSNEEERTLIINLNISSLEEGLKSVSEEIENKEIVENYKSEEENDNCDRSCTNDSELSDHEDVEINDAEENDTAIKFECTTCKKQFKSASVLKVHQAKHHRKVHCEVCRKEFSLVRQLKAHMKIHSDYKPFTCNLCPKSFSCAGSLNKHLRIHGGERKHLCMQCGKRFYEHGHLVIHLRTHSGEKPIICSICGKGFADPRGLVAHNKIHTGERNYECNSCGKRFAHSFALTAHKRIHTGEKPYICSICGAAFGTSSYLTIHTRTHTQERPYKCETCPKAFVSKCALAAHNMIHTGEKKYQCFICGKRTGRAADLTIHMRSHTGEKPYCCDQCPKRYPTSSNLAAHKKTHLGIREHVCTICNKAFGDTRTLKCHMRTHTGEKPYVCHICGSRYTQSGQLAAHRKTHQQETV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00137234;
90% Identity: -
80% Identity: -