Asti043083.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius sticticus
Gene Symbol
-
Assembly
GCA_963966075.1
Location
OZ014514.1:36920603-36926304[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00078 0.06 15.2 3.7 1 23 121 144 121 144 0.97
2 17 0.0011 0.082 14.8 0.3 1 23 150 172 150 172 0.98
3 17 0.0013 0.1 14.5 0.3 1 23 178 200 178 200 0.98
4 17 9.6e-06 0.00073 21.3 0.5 1 23 207 229 207 229 0.98
5 17 0.0014 0.11 14.4 1.2 1 23 235 257 235 257 0.99
6 17 0.00028 0.022 16.6 0.3 2 23 263 284 262 284 0.97
7 17 0.0026 0.2 13.6 0.7 1 23 290 312 290 312 0.98
8 17 3.3e-05 0.0025 19.6 1.2 1 23 318 340 318 340 0.97
9 17 0.077 5.9 9.0 2.4 1 23 418 440 418 440 0.99
10 17 0.0039 0.3 13.0 7.0 1 23 460 482 460 482 0.99
11 17 0.011 0.82 11.7 0.5 1 23 488 511 488 511 0.94
12 17 0.0037 0.28 13.1 4.9 1 23 535 557 535 557 0.99
13 17 7.3e-05 0.0056 18.5 1.6 1 23 563 585 563 585 0.99
14 17 5.3e-06 0.00041 22.1 1.9 1 23 591 613 591 613 0.99
15 17 0.0049 0.38 12.7 0.9 1 23 619 641 619 641 0.99
16 17 0.00069 0.053 15.4 1.3 1 23 647 669 647 669 0.98
17 17 9.9e-05 0.0076 18.1 0.6 3 23 677 697 675 697 0.97

Sequence Information

Coding Sequence
ATGGATTTAAACATTCCAAATCAAgaaataaaaactgaaccggTTGATTCAATGGAAGAAGTcgatattaaatataaaaattacaatgAGCCTGAAGTTGGGAACTCTTTTACCGATGAATTTATTGAAGGATCTACCGATAGGTTTGAATCTAACAAACGAATTAAAACCGAACCGAAAATAGAGTttgttgaaataaaacctgaaccaAATGGTGTCGTGGAACAGCTTAAACAGGAATGTTTCGATACGGAAACTGAACCAACTAAACATTTCGAAGAAACGATCGTAAAATCAgaagatttaaaaaaacctGAAATTGAGGAACCTCAAATACAATATATGCGTACCCATTCGGGCTTCGAATGCAGTGTTTGCGATTACTCGTGTAAGACCTCGTTTAATATTAAACGACACGTAAAACGACTGCACATGGGGCAAAAACAATTCAAGTGCGGTACCTGTGATTTCACCGCAGTTCAATCTTACGATCTTAAAATACATCTCCAAATTCATGCAGGGGTCAAATTATACAAGTGTGATACGTGCGAATACGCTGGTAGTACAACGTGGAAGCTCAAACGTCACATGGCTATACACTCGGGTAACGGAAAAACTCACAAATGCCCAACGTGTGACTTTTCTTCTGCAGATGCTGGTAACCTCAAAGTTCATATGAGATCTCACACGGGGGAAAAGCCGTACAAATGCATGATTTGCATGTACGCTGGGACTACATCGTCAAAACTCAAACGTCATATGAGTACGCATAGTGAAAAGATGGATACGTGCGGTATGTGTGACTTTGCTACTAACCAAGCTTACGAGCTTAAAAGACATATGTTAAAGCACACCACTGAGAAGTCGTATACTTGTGATGCGTGTGATTATGTTACTGCTAAGATGAGTGATCTCCGAAGGCATAACAGAAAACATACCGGGGTTAGGCCACATAGCTGTGCAGTctgtgattatgctagtacaCAATCATCGGATTTAAAGAGACATATGTTGAAACATACAAAGGAGAAGCCTTATACGTTAAAATCGGAACTTTCCAATGAGTCTGCGAGCATGCAATCGCTTGACGAGCAGTCACCACTTGAACCGATGTGTGAAGTTAAAATTGAGATGGACATCGCGGAAACTTCAATTTGCAAGCCCGCGTCCCTAACGGCTCAACAACCAACGGAAACTACCGGAGAACCAACGCAACTGTCAGACGACGTCAAACATAAGGGAAAGAAAACGTACAAGTGCGACACGTGCCAATACACAACATGGCAACCGAGATTCCTAAAAGCGCACAAACGGAAACACGCGCGGAACAAGAAGCTCCTGAAAGTTTACATGCGTAAACTCTCCGgagaaaaaatgtttaaatgcacTGAGTGCGACCGCTCTTATACGACCCATTGCGCGTTCGCGAAACACTCAAAAACACACGCTGTCGAGAAATCATACAAATGCGAACTTTGTGACTATGCTACTACACTTGTACGTAACCTCACAAAACACACCCTCGCGAAACACACCCTTACGGAACAGACAGAAGATAACTCCTCGGAATATATAACGTCATCGTCGTTCGCCGGAAACATGTTTAAGTGTACGACGTGCGAGTCATATTACGAGTCCCATAGGGACCTCACgaagcatatgagaacgcatacgggaaagaaaatttttaaatgcacCATATGTGACTACCAAGTAGCGCACTCTGGGTCGTTTAAAGTGCATATCAGGACTCATACCGGGGAAAAACCATTCCAGTGCCCGAAGTGTGATTATTCGTGTGTAAAACGAGCGAACTTAACGGTTCACGTTCGCACCCACACGGGGGAGAAGCCTTTCCGTTGTAGGTTCTGTAAGTACGCGAGTGCTCAAGCTTCCGTTCTGAAATTGCATCTGCGTACGCATACGGGAGAGAAACCGTACAACTGTGCTGtgtgtgattatgctagttCGCAAATGTGCCAACTGAAGAACCATATGAGGATCCATACCGGGGAGAAACCGTATGGATGTACCGTGTGTGAATATGCTAGCACGCAACGGTCTACTCTGAAGCGTCATATGAAGGTCCATGAAAAAGTCGAATGA
Protein Sequence
MDLNIPNQEIKTEPVDSMEEVDIKYKNYNEPEVGNSFTDEFIEGSTDRFESNKRIKTEPKIEFVEIKPEPNGVVEQLKQECFDTETEPTKHFEETIVKSEDLKKPEIEEPQIQYMRTHSGFECSVCDYSCKTSFNIKRHVKRLHMGQKQFKCGTCDFTAVQSYDLKIHLQIHAGVKLYKCDTCEYAGSTTWKLKRHMAIHSGNGKTHKCPTCDFSSADAGNLKVHMRSHTGEKPYKCMICMYAGTTSSKLKRHMSTHSEKMDTCGMCDFATNQAYELKRHMLKHTTEKSYTCDACDYVTAKMSDLRRHNRKHTGVRPHSCAVCDYASTQSSDLKRHMLKHTKEKPYTLKSELSNESASMQSLDEQSPLEPMCEVKIEMDIAETSICKPASLTAQQPTETTGEPTQLSDDVKHKGKKTYKCDTCQYTTWQPRFLKAHKRKHARNKKLLKVYMRKLSGEKMFKCTECDRSYTTHCAFAKHSKTHAVEKSYKCELCDYATTLVRNLTKHTLAKHTLTEQTEDNSSEYITSSSFAGNMFKCTTCESYYESHRDLTKHMRTHTGKKIFKCTICDYQVAHSGSFKVHIRTHTGEKPFQCPKCDYSCVKRANLTVHVRTHTGEKPFRCRFCKYASAQASVLKLHLRTHTGEKPYNCAVCDYASSQMCQLKNHMRIHTGEKPYGCTVCEYASTQRSTLKRHMKVHEKVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-