Basic Information

Insect: Aphodius sticticus
Gene Symbol: -
Assembly: GCA_963966075.1
Location: OZ014508.1:15395101-15410354[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.2e-05 0.0048 18.7 0.1 1 23 134 156 134 156 0.98

2 12 7.7e-05 0.0059 18.4 0.8 1 23 162 184 162 184 0.98

3 12 2.7e-06 0.00021 23.0 0.3 1 23 190 212 190 212 0.99

4 12 7e-07 5.4e-05 24.8 0.8 1 23 219 241 219 241 0.98

5 12 1.9e-06 0.00015 23.5 0.8 1 23 247 269 247 269 0.99

6 12 0.00011 0.0086 17.9 0.5 1 23 275 297 275 297 0.98

7 12 1.8e-05 0.0014 20.4 2.5 1 23 303 326 303 326 0.97

8 12 6e-06 0.00046 21.9 0.9 1 23 332 354 332 354 0.98

9 12 9.7e-06 0.00074 21.2 0.8 1 23 363 385 363 385 0.97

10 12 1.9e-06 0.00014 23.5 1.3 1 23 391 413 391 413 0.99

11 12 0.0003 0.023 16.5 0.5 3 23 421 441 420 441 0.99

12 12 1.4e-07 1.1e-05 27.0 2.9 1 23 447 469 447 469 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.2e-05	0.0048	18.7	0.1	1	23	134	156	134	156	0.98
2	12	7.7e-05	0.0059	18.4	0.8	1	23	162	184	162	184	0.98
3	12	2.7e-06	0.00021	23.0	0.3	1	23	190	212	190	212	0.99
4	12	7e-07	5.4e-05	24.8	0.8	1	23	219	241	219	241	0.98
5	12	1.9e-06	0.00015	23.5	0.8	1	23	247	269	247	269	0.99
6	12	0.00011	0.0086	17.9	0.5	1	23	275	297	275	297	0.98
7	12	1.8e-05	0.0014	20.4	2.5	1	23	303	326	303	326	0.97
8	12	6e-06	0.00046	21.9	0.9	1	23	332	354	332	354	0.98
9	12	9.7e-06	0.00074	21.2	0.8	1	23	363	385	363	385	0.97
10	12	1.9e-06	0.00014	23.5	1.3	1	23	391	413	391	413	0.99
11	12	0.0003	0.023	16.5	0.5	3	23	421	441	420	441	0.99
12	12	1.4e-07	1.1e-05	27.0	2.9	1	23	447	469	447	469	0.98

Sequence Information

Coding Sequence: ATGGAATTTAACACAGATATAAAGTTTGAAACCCTATGCCGCATATGCATAAAACCATCACCAGATATGCGCGACATATTTGGAGGAAAGTTAGATGATATGCTGAAAGATATTGCCTCAGTATCAGTAGACCAAGCTGATGAACTACCACAACAGATATGTGATCAATGCACAAATGAGATAAGTCGATGTTACTTCTTCAGAATGATGGTTATACAGAGTGACGCAGATTTACGAGCAATTCTTAGCCGCCGTAAAAAAAGCCATGACGACAATATTGGAGTTGATGAGACAGATAAAAATAGCGACGAAGACATCTGCAATGTTGAAGTTGATGTGAAAGACGAGAATGTAGAGGAACCTAACCCTACAGAAGATTTAGACAAATCTGATAGCATATTTGTatgcaaaatatgcaataaagaGTTGGGTAATTTACCTGCTTTAAAACGCCATATGAAAATTCATACGGATCTTAAACCACACCAGTGTGAAATATGCAAGAAAGTATTGCGAAATCTGCCAGCGTGGAAACGGCATATGAAGATTCATTCGAATATTAAAACGTTTAAGTGTACTGTGTGCCCGGCAGCTTTTAGAGATGGTGGAAATTTAACTAAGCACATGAAGAGGCATAGTATCTTAGACAGGAAGCACCAGTGTGATGAATGTGGATTACGATTTATCGAGAAAAGTGAATTGACTAAACATATAAGGGTGCATACGGGGGAAAAGCCATATAGCTGCACGGTTTGCTCCAAGGCTTTCCGCACACCTAGACAGGTCCAAATTCATATGAAGACTCACAGTGGCGAGCGTCCCTACACCTGTGACACCTGCCAGAAATCATTTCCCTATATCGTATCGCTAGAGAGACACAAGCTGATCCACACAGGAATAAAATCGTTCGCCTGCCAAGAATGCAACAATTCCTTCTCCCAGAAATCGCATCTCGACATCCACATCAGAAGGAAGCACACCCACGAGTGTCCATACATGTGCACCGAATGCGGAAAGACGTACGTGACCAAGAAAGAACTGGACAATCACACACGTGAGCATACGGGCGAGAAAATACCCCTACGATTTTCCTGCGCTCAATGCAACAAACAATTTGCCAGATCTTCAGACCTAAAGACGCACTACATTGTCCACACGGATGAGCGGCCGTACCAATGCGATGTTTGCGGGAAAAAATTCAGGTTTTCCTCGAATATGGCGGCGCACAAGAAGTCACATACGGGGGAAAAGAAGCACGGTTGTCAGTACTGCGGGAAAGCTTTTACCGAGTCTACGATATTGAAAATGCATCTGAGAACGCATACCGGGGAGAGACCTTATTGTTGTCAAGTTTGCGGAAAGAGTTTCGCCCAGAAGAGCACACTTACCACGCATATGAAAGTGCATAATAAAGTTGAAGTGGTTGTTAGTTAG
Protein Sequence: MEFNTDIKFETLCRICIKPSPDMRDIFGGKLDDMLKDIASVSVDQADELPQQICDQCTNEISRCYFFRMMVIQSDADLRAILSRRKKSHDDNIGVDETDKNSDEDICNVEVDVKDENVEEPNPTEDLDKSDSIFVCKICNKELGNLPALKRHMKIHTDLKPHQCEICKKVLRNLPAWKRHMKIHSNIKTFKCTVCPAAFRDGGNLTKHMKRHSILDRKHQCDECGLRFIEKSELTKHIRVHTGEKPYSCTVCSKAFRTPRQVQIHMKTHSGERPYTCDTCQKSFPYIVSLERHKLIHTGIKSFACQECNNSFSQKSHLDIHIRRKHTHECPYMCTECGKTYVTKKELDNHTREHTGEKIPLRFSCAQCNKQFARSSDLKTHYIVHTDERPYQCDVCGKKFRFSSNMAAHKKSHTGEKKHGCQYCGKAFTESTILKMHLRTHTGERPYCCQVCGKSFAQKSTLTTHMKVHNKVEVVVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00981433;
90% Identity: iTF_00981433;
80% Identity: -