Basic Information

Insect: Aphodius sticticus
Gene Symbol: -
Assembly: GCA_963966075.1
Location: OZ014510.1:23929418-23931340[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 7.3 5.6e+02 2.7 0.4 5 16 8 19 7 20 0.90

2 15 0.0015 0.12 14.3 0.2 2 20 144 162 143 164 0.91

3 15 1.4e-05 0.0011 20.7 0.5 1 23 220 242 220 242 0.98

4 15 7.9e-06 0.0006 21.5 1.1 1 23 250 272 250 272 0.98

5 15 0.00045 0.035 16.0 0.4 1 23 278 301 278 301 0.95

6 15 0.00088 0.068 15.1 1.0 1 23 313 335 313 335 0.97

7 15 3.1e-06 0.00024 22.8 3.0 1 23 342 364 342 364 0.98

8 15 6.3e-05 0.0049 18.7 4.4 1 23 370 393 370 393 0.98

9 15 3e-06 0.00023 22.8 1.3 1 23 417 440 417 440 0.98

10 15 4.5e-06 0.00034 22.3 0.4 2 23 453 474 452 474 0.97

11 15 6.9e-07 5.3e-05 24.8 0.5 1 23 480 503 480 503 0.95

12 15 2.3e-06 0.00017 23.2 0.2 1 23 509 532 509 532 0.95

13 15 1.8e-07 1.4e-05 26.7 2.5 1 23 541 563 541 563 0.98

14 15 4.4e-05 0.0033 19.2 1.1 1 23 569 591 569 591 0.97

15 15 1.3e-05 0.00097 20.9 5.1 1 23 597 619 597 619 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	7.3	5.6e+02	2.7	0.4	5	16	8	19	7	20	0.90
2	15	0.0015	0.12	14.3	0.2	2	20	144	162	143	164	0.91
3	15	1.4e-05	0.0011	20.7	0.5	1	23	220	242	220	242	0.98
4	15	7.9e-06	0.0006	21.5	1.1	1	23	250	272	250	272	0.98
5	15	0.00045	0.035	16.0	0.4	1	23	278	301	278	301	0.95
6	15	0.00088	0.068	15.1	1.0	1	23	313	335	313	335	0.97
7	15	3.1e-06	0.00024	22.8	3.0	1	23	342	364	342	364	0.98
8	15	6.3e-05	0.0049	18.7	4.4	1	23	370	393	370	393	0.98
9	15	3e-06	0.00023	22.8	1.3	1	23	417	440	417	440	0.98
10	15	4.5e-06	0.00034	22.3	0.4	2	23	453	474	452	474	0.97
11	15	6.9e-07	5.3e-05	24.8	0.5	1	23	480	503	480	503	0.95
12	15	2.3e-06	0.00017	23.2	0.2	1	23	509	532	509	532	0.95
13	15	1.8e-07	1.4e-05	26.7	2.5	1	23	541	563	541	563	0.98
14	15	4.4e-05	0.0033	19.2	1.1	1	23	569	591	569	591	0.97
15	15	1.3e-05	0.00097	20.9	5.1	1	23	597	619	597	619	0.98

Sequence Information

Coding Sequence: ATGAACGACAAACTCACGGAAATATGTCGATTATGTTTCACTTCAAGTTCCAGTTTATTCTGTCAATTAAACCTGCAAGATGACAGCGACCATAGAAAACAATTGCACGTAGTATTTCCAGAAATTgatATAGATGTGATTCCTGCGCCAGTTGTATGTTCAGAATGCTCAGAAGTATTGCAGAAGGCCTACGTCTGCAAATCCAATTGGTTACTCTGCGAGAAACGTTTAAAAATTTATAGCGAACAACATAACAACGTCCAAGTTAGTTTAGCAGAAGTCTTAAGCTTCAGAGACAATGTGGAAGATTTTATGGTATTTGTTGTTGGGTGTAACCCTGATACAGGCGATGAAGCTCAAATCAAAGCAGAAGTAGACGAAAAAAAAGACACACTTGCAAAAAGAGTTACCagacaatcaaaacaattgaattgCCCGACTTGCCCTAAGACATTCAGTAGTATATCGGGCTTAAGGTATCATTCCCAGAGATGCGATGTAAAGAAAGTTGGAAAAGATGAAGAGAATACTTCAGACGAATTTGACGATTGTGATAACACAGCAGATTTTGAGGATGACGATGACGTAAAATTAGAAGATATAAAAAGTGAGGATAAAACTTGCGTTAAATGCAACCAATCCGGATGTTCGTGCGAGTTTCCTTGcgagatttgcgagaaaatcttTATTTCAAAGCTTAAGCTGCAACGTCATCAATTAACTCATACTCAGGACCGACCGAGACCATTCCAATGCGAATTTTGCGAGAAAAGCTTTTATGTAAAATCATCATTGATAAACCACCAAGCAACGCACGCCGATTCTCGCGAATTCTTATGTTATAATTGTGATGCTGGTTTTgctagtaaaaaatatttacaagatCATATCCGGAGGGTACATTTAAGAAAAGACGACGAACGACTAAACGGGGAATTCCCCTGCGATGTCTGCCTCAAAGTTTTCAACACGTTGGCAAAAATGAAACGGCATCGGACACGCCATGAAGAAAGAGTACGGACACACAAATGTGAACTCTGCGACCAGAGCTTCTTCACAAAATCAAACTTATCAAATCATATGGCAACTCACGCAGATGCTAAAGAATTCTCATGCGAAATGTGCGGGTTATGTTTTGCGTCTCGGAAATACTTACACGAACATATGCGACGATTGCATAACGTTCTGAGACGGAAACCATATAAAAGCCCAAAAGATAACCCCGACAAACCAGTGGATGATTCGTTATTTACCTGCGATATCTGTGGAAAGAAATTCACTCAAAAACGTTACGTTACACAACATATATCTACGATACATTTCGGGATTAAACGGAAacggataattaaaaatttacggTGCGAAATGTGCGGACAgatttttactagtaataatttgtTAACGTTGCATATACGGACTCACACTGGGGAACGACCTTACAAGTGTAACGAATGTGATAAAAGTTTTGCGCAGGCGAGTTCTTTGAACACGCATAAACAGGCGATTCATAGCAATGAAAAGCCGTACGCTTGTGAATATTGCGGGAAGAAATTTGCGACAAAAGGCATGCTTCTGAAGCATATACAAGCGATGCATATTGCAGATAAGATTCCAAAGAATCATAAGTGCTCGTACTGTGGGAAAGCGTTCAGAACAAAAAGTCAAATGTTGGCCCATATGCGGTGGCATACAAATGATAGGAGATTCTCTTGCGACATCTGTGGGAAGTTGTTTATCAATAACGCTTGCCTCAAGAAGCATAGGGCTATTCATTTCGACGAGAAAGCGCATAAATGTGAGACTTGCGGAAAAGGTTTTcatcaaaaatttaatctcaaaATTCATATGAAAGTTCATATGAGAATCGAATAA
Protein Sequence: MNDKLTEICRLCFTSSSSLFCQLNLQDDSDHRKQLHVVFPEIDIDVIPAPVVCSECSEVLQKAYVCKSNWLLCEKRLKIYSEQHNNVQVSLAEVLSFRDNVEDFMVFVVGCNPDTGDEAQIKAEVDEKKDTLAKRVTRQSKQLNCPTCPKTFSSISGLRYHSQRCDVKKVGKDEENTSDEFDDCDNTADFEDDDDVKLEDIKSEDKTCVKCNQSGCSCEFPCEICEKIFISKLKLQRHQLTHTQDRPRPFQCEFCEKSFYVKSSLINHQATHADSREFLCYNCDAGFASKKYLQDHIRRVHLRKDDERLNGEFPCDVCLKVFNTLAKMKRHRTRHEERVRTHKCELCDQSFFTKSNLSNHMATHADAKEFSCEMCGLCFASRKYLHEHMRRLHNVLRRKPYKSPKDNPDKPVDDSLFTCDICGKKFTQKRYVTQHISTIHFGIKRKRIIKNLRCEMCGQIFTSNNLLTLHIRTHTGERPYKCNECDKSFAQASSLNTHKQAIHSNEKPYACEYCGKKFATKGMLLKHIQAMHIADKIPKNHKCSYCGKAFRTKSQMLAHMRWHTNDRRFSCDICGKLFINNACLKKHRAIHFDEKAHKCETCGKGFHQKFNLKIHMKVHMRIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00981430;
90% Identity: iTF_00981430;
80% Identity: -