Asti020484.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius sticticus
Gene Symbol
-
Assembly
GCA_963966075.1
Location
OZ014508.1:54409230-54417182[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00018 0.013 17.3 0.8 2 23 154 175 153 175 0.97
2 16 2.7e-05 0.0021 19.8 4.7 1 23 180 202 180 202 0.98
3 16 0.00019 0.014 17.2 4.0 1 23 208 230 208 230 0.96
4 16 0.00037 0.028 16.3 2.2 1 21 236 256 236 257 0.95
5 16 4.8e-05 0.0036 19.1 0.1 1 23 264 286 264 286 0.98
6 16 0.00063 0.048 15.5 0.1 1 23 495 517 495 517 0.96
7 16 1e-05 0.0008 21.1 5.0 1 23 523 545 523 545 0.96
8 16 4.1e-05 0.0032 19.2 7.1 1 23 551 573 551 573 0.97
9 16 0.013 0.98 11.4 0.4 1 23 578 601 578 602 0.94
10 16 0.0051 0.39 12.7 3.4 1 23 613 635 613 635 0.98
11 16 2e-06 0.00016 23.4 5.2 1 23 641 663 641 663 0.98
12 16 2.4e-06 0.00019 23.1 0.5 1 23 670 692 670 692 0.96
13 16 2.6e-05 0.002 19.9 1.3 1 23 698 720 698 720 0.98
14 16 3.3e-06 0.00026 22.7 0.7 3 23 728 748 726 748 0.96
15 16 6.2e-05 0.0048 18.7 0.1 1 23 754 776 754 776 0.99
16 16 6 4.6e+02 3.0 0.2 2 23 782 804 781 804 0.88

Sequence Information

Coding Sequence
ATGGATTACTCGAGTGTTGATTTATCACGACTGTGTCGCACGTGCAAGAACGAATCGACGGACATGCGACCCCTCTACACTCGTGACTCTGCCAGCGGCAAAGAAAACCCCCGAATTGACGAGATGCTCATGACTTGCGCATCCATACAGGTGGACGCCACTGACGGTCTACCAAACACAATATGCCGGACTTGCGTTTATCAATTAAAAAACGCGTTCACATTCAAAGAGTTATGCGAACAAACAGACCAGTTTTTCAGAAGCTACATAAAAACCTCCAAAATCAAAGACGAACATCCGAACGAACTCTCTACTTTAACCAACAGCGTAATATGCGAACTCAAAGAGTTACCGACGGAAATCCCAAACGAAAACAGCATGGACGTCTCCGAAGTCTCGGACATCGAAAGAGACAAGTGCGATTACATCGAACTCCTAGATAATAACGTCATGCTCCTAACGTGCCGCGAATGTCGTAAAGTTTTCTCAACCGTCGATGGCTTAAAATCGCACAAACGCATCCACACCGGTCAACTCTTCAAATGCAAACAATGCAATAAAGAATATACCCGGCTGAGTCACTTACAACGTCATGAACTATCCCACGATCGTCGCAAATACCACGTATGCAAAATCTGTAATAAAACATTAACACGTTTCGATCACTTAAAACGTCacttggtaatacatcttaaagatAAACCATATAGCTGTAATATGTGCAACCGCGGCTTCAATCGTTCCGAACATTTATTAAACCACAAGAAGAAATGCAAAGGGGAACCTGTTTATGTCTGTGAGGTCTGCAATAAAGCTTTTAACCGTGGCGATAGCTTAGAAGTCCATAAGAAAATCCATGACCAACTAGAGCGGGAAGTTAAACTGCCGACGTTGGAGAATCTAGAAAATATTAAGGAGCATTACATCGAGGTTGATTACGACCGACATATAATTTCCGATGAGTCTGAACCGGAATTTGATGACGGCACAGATATTCGAATAGATGCCCCCTTTGACGACGATGATTACGGAAGTACGAACGGTGATAGTATTATATCTGATACTAAAAACGATGATTTACTGAATACAACCGAAGATACCGTCACCAACAATGATAATTTTGAAGAAACTCCTCTTAATACTTTACCCTGCGAGGTCTTGGTTAATGCTGAAGCCGAAAATGACTTACAAACAATTACATCAAGCGAGATATATGCTGAAGAAGACCCACCGGAAATTATGGAAGAAAAGGCCAAAATTGAGGAGGAATTGTATAAGGAAAATGAGTTATTCTTCGATGATGTTATAGACAATCCGACAGATTCTGACGGATCTGAATACAGCCCTACGAAGCAGTCGCCCAAGAGAAAGAAACGCGGTCGACCGCGAAAGCAGAAGTCCAAAAAGCCACGCGGTCGTCCCCCCTTGGTACGATTGAAAATAAAAGCCGAGGTTAAGCAGAAACAGGGTGAAGTTAGTGAATATCCGTGCCCAGAATGTAAGGTTGTCTTCAGGAAAATGCGCGAGTTGGAGAAACATGTCGTAGTGCACAAAGGATTACGCTTGCACGAATGTAAAACTTGCGGAAAGAAATTTTCTAGGAATGCGCATTTGCGACGGCACGAGGTAACTCATTCGGAAGAAAAACCGCACGTATGTGAGATCTGCCAGAAGTGTTTCTCGCGACGGGACCACCTCCAGCAGCACGTCAAACAGCACCAACAAACGGATTATCCATGCGAATTGTGCCCGTCTGTTTATAGCCGTCTCGAGCAACTAGACCGGCACAAGGCCGTGAAGCATCATATCGGCGAGAAAATCGTCGGTGAGAAACGACACAAGTGCTCGATATGCTCGAAAGGTTTCACCACCGAGAAATACCGTGACGTGCACATGAAAAGTCACACGGGCGATAAGAAATACCGGTGCAAGACGTGCGATAAGACGTTTATATCAAAATCGCACCTTAACGAGCATATGAAGTTCCACAGTGATAGCTCGAAGAAGTTCTTGTGTTCGGAGTGCGGGCAGAGGTTTATCAGGAACGATTATCTGATTATTCATATGAGGAGGCATCGTGGAGAGAAGCCCTTCAAGTGTAAATTCTGCGGGAAAGGCTTCCCCAGAACGACAGACCTTACCGTACACGAGAGGTACCACACAGGTGAAAAAACGCACTTGTGTATGATATGCGGCCGGGGATTTGGAAGGGCGTACAACTTAACAGTCCATATGCGGACACACACGGGCGAGAAGCCGTACCGATGTTCGTACTGTGACGCAGCTTTTGCGCAAGGCAATGATCTGAAGGCCCACGTGCGTCGACATACCGGTGAACGATTCTTGTGCAACATGTGCCCCGACACCTTCCTCATGGGTTACCTGTTGACAGCACACAAAAGAACTGCCCACGGTTTGAATGTCGTGAGTAATATTAGGCGGCTACAGACAACGAACAAAGTTGAGAATCCTGAAGACTCTCCACCTATAACGGTGTCACTACCAACACCCGTCATCATCCCGTCAGAACCACCATCATTGTATTTATAA
Protein Sequence
MDYSSVDLSRLCRTCKNESTDMRPLYTRDSASGKENPRIDEMLMTCASIQVDATDGLPNTICRTCVYQLKNAFTFKELCEQTDQFFRSYIKTSKIKDEHPNELSTLTNSVICELKELPTEIPNENSMDVSEVSDIERDKCDYIELLDNNVMLLTCRECRKVFSTVDGLKSHKRIHTGQLFKCKQCNKEYTRLSHLQRHELSHDRRKYHVCKICNKTLTRFDHLKRHLVIHLKDKPYSCNMCNRGFNRSEHLLNHKKKCKGEPVYVCEVCNKAFNRGDSLEVHKKIHDQLEREVKLPTLENLENIKEHYIEVDYDRHIISDESEPEFDDGTDIRIDAPFDDDDYGSTNGDSIISDTKNDDLLNTTEDTVTNNDNFEETPLNTLPCEVLVNAEAENDLQTITSSEIYAEEDPPEIMEEKAKIEEELYKENELFFDDVIDNPTDSDGSEYSPTKQSPKRKKRGRPRKQKSKKPRGRPPLVRLKIKAEVKQKQGEVSEYPCPECKVVFRKMRELEKHVVVHKGLRLHECKTCGKKFSRNAHLRRHEVTHSEEKPHVCEICQKCFSRRDHLQQHVKQHQQTDYPCELCPSVYSRLEQLDRHKAVKHHIGEKIVGEKRHKCSICSKGFTTEKYRDVHMKSHTGDKKYRCKTCDKTFISKSHLNEHMKFHSDSSKKFLCSECGQRFIRNDYLIIHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCMICGRGFGRAYNLTVHMRTHTGEKPYRCSYCDAAFAQGNDLKAHVRRHTGERFLCNMCPDTFLMGYLLTAHKRTAHGLNVVSNIRRLQTTNKVENPEDSPPITVSLPTPVIIPSEPPSLYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00981425;
90% Identity
iTF_00981425;
80% Identity
-