Asti028679.1
Basic Information
- Insect
- Aphodius sticticus
- Gene Symbol
- -
- Assembly
- GCA_963966075.1
- Location
- OZ014510.1:23934735-23936952[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00065 0.05 15.5 1.9 1 20 177 196 177 199 0.93 2 18 6.9e-05 0.0053 18.6 4.8 1 23 205 228 205 228 0.97 3 18 3.6 2.8e+02 3.7 1.5 1 23 237 260 237 260 0.88 4 18 0.00054 0.041 15.7 2.7 1 23 265 288 265 288 0.97 5 18 0.0035 0.27 13.2 1.7 1 23 304 327 304 327 0.98 6 18 0.0029 0.22 13.5 0.2 1 21 335 355 335 356 0.95 7 18 1.3 1e+02 5.1 0.7 3 19 368 384 367 386 0.95 8 18 1.3e-06 0.0001 24.0 0.5 1 23 393 416 393 416 0.96 9 18 0.0002 0.016 17.1 0.2 2 23 424 446 423 446 0.96 10 18 1.3e-05 0.00097 20.9 1.9 1 23 456 478 456 478 0.97 11 18 0.00047 0.036 15.9 0.9 1 23 484 507 484 507 0.96 12 18 0.00037 0.028 16.3 0.6 1 23 516 539 516 539 0.95 13 18 7.7e-06 0.00059 21.6 2.3 2 23 545 566 542 566 0.91 14 18 9.3e-06 0.00071 21.3 0.2 1 23 572 595 572 595 0.96 15 18 2.7e-05 0.0021 19.8 0.3 1 23 601 624 601 624 0.94 16 18 0.051 3.9 9.5 1.7 1 23 633 655 633 655 0.95 17 18 4.5e-07 3.4e-05 25.4 0.4 1 23 661 683 661 683 0.97 18 18 1.7e-05 0.0013 20.5 5.4 1 23 689 711 689 711 0.98
Sequence Information
- Coding Sequence
- ATGTCTATTTGTCGGTTTTGTTTGAAACTATCACCAGAAGATTCTTGCAAGAACACCACTTCCATCAATGAGGAACAATTTCAGCTAATACTACCAGAAATAgttCTAACTGCAGTAGAATCATCTGTAATATGTGACCCTTGTGCAATACTACTTGATAACGCTTACACTTTCAAAATCTGCTGCCTGGAATCTGAGAAACTCATCAACGATTATAGAGACGTACACGGCACTGTGAATTTAATTGAAATTCATGAAGGTAATATCGATTTAAATGACAATTTGGATGAAAAAAGTGATCTACATATTGAGGACTCAGTTGTGAAAGCTGAAGTTGGAGAAAATGATGTTTATAAATCAAACATTGATAACGATGATAATTACGACGGATTTAATGATTCTGCCGGAGAAGAAGATAGTGCAGAATGTTTAGAGAACTTGGATATTAAGCAGGAGCtcgtgaataaaaaaaaaactggcaGTACTGTAAGAAAATCCAAAAAGTTGCAGGAATTATCAAACACGAGTCACAATTGTCAGAAGTGCTCGGCAAGCTTTAAAAATCCATACAGTTTACAACGGCACCAATGGATCCATATCACAGAGAAGAAATTCAGTTGCTCAGATTGTAATAAAAAGTTTACGACTAGCTGGTATTTAAAGGATCACGTGAAACGATGTCACTCTCCGGCAAGCAAactaaagaaatttgaatgcaaACCTTGCAACAAAACTTTTTTGGAAGCGTTCAGGCTTAAAAGGCATCATGCAGAAGTTCACTGTGAGAAAAACTTCAAATGCAATCATTGCACCTTAAGTTTTTCAGCCCAAAGATATTTAGAATCACACATCGAACGCCAACATAACACAGTCGAAACGAATTCGGAAGAACTTGAGTCAAAAAAGAAGTATAAGTGCGAACAATGTGCAATTCGTTTTTCAGCCCATAGCTTCTTGCAAGCGCATATCAATcgtaaacacaaaataaaacaagaattaAAATTCAATTGCCCACGTTGCAATCTTGTATTTACCACCATCCAGCTTTTGCAAACCCATTTAAAAGAACAATACGACAAATCATTCGCGGATCTGACGCTTTGTAAGTTTTGCGCTAGGCCATTCGAAAACCCGTGCAAACTGAGAGATCACGAGGCGGAATGCGCCGTAAAGCCGTTCATATGCGAGATATGCGGAAAACGGTACGCACGCAAGTCCAGTCTTCTCTCTCACATTCGTCAAACGCACTCTACGGACAACCACGAACTTGTCTGCCAGACCTGCGGCATCCTTTACAAGAGCAAAGTGTCGCTTAACGCACACATCCGCACCCAACATTTAGGCATTCGGCGTATACGCACGAAATACGATTGCGACGTTTGCAATAAAAGTTTCTGCAAACCAACCGCTCTCAGAAGGCATCGGTTAATACACGAAGTACATACGGATTTCGTATGCCCCGTTTGCCAGAAAGGATTTAACtcgaaattttatatgcacGTGCACATAAACGAGGTCCACTTTGAGAAAAGGGAATTAACGAAATACGTCTGCCAGCATTGCGATGCCGAATACGATACCCAAAGTGAGCTAAATACTCACAAATCAGTCGTTCATACAAAATATCGATGTACTTGCGAGATTTGCGGTATATCATGCAGTAAAAAGTCAGAATTGGCAGTGCACATGCGTATCCATACTGGAATAAAACCGTTCGCCTGCGACGAATGCGGTAAGGCGTTCGTCCAATATAGTACACTTCTAGTCCATAAACGTTCCGTGCATAGCACTGAACGACCGTACTCTTGTACGTATTGCGAGAAATCGTTCTCGTTGAAAGGTACTTTGGCAAAGCACATTGAAGGCGTTCACTTGAAAGATAAAATTGAGAAGAAGTTTATCTGCACTTTCTGTTCGAAAAGCTATTTAACAAGAAGTGGACTTAAGTCGCACACGACCTGGCATACCGGCGAGCGCAATTACATTTGTGGCATATGCGGTAAGAGGTTTGTTAACAATTCGTCCTTGAGGAAGCACACACTCATACATTCTGATGAGAAGCAGCACGAGTGCCAAGTATGCTCAAAGAGATTCCATCAGAAATCCAATTTGAAGATTCATATGAAAGTGCATAATAAGATACCGCAGAATAATGTTTTACCGAGTTAA
- Protein Sequence
- MSICRFCLKLSPEDSCKNTTSINEEQFQLILPEIVLTAVESSVICDPCAILLDNAYTFKICCLESEKLINDYRDVHGTVNLIEIHEGNIDLNDNLDEKSDLHIEDSVVKAEVGENDVYKSNIDNDDNYDGFNDSAGEEDSAECLENLDIKQELVNKKKTGSTVRKSKKLQELSNTSHNCQKCSASFKNPYSLQRHQWIHITEKKFSCSDCNKKFTTSWYLKDHVKRCHSPASKLKKFECKPCNKTFLEAFRLKRHHAEVHCEKNFKCNHCTLSFSAQRYLESHIERQHNTVETNSEELESKKKYKCEQCAIRFSAHSFLQAHINRKHKIKQELKFNCPRCNLVFTTIQLLQTHLKEQYDKSFADLTLCKFCARPFENPCKLRDHEAECAVKPFICEICGKRYARKSSLLSHIRQTHSTDNHELVCQTCGILYKSKVSLNAHIRTQHLGIRRIRTKYDCDVCNKSFCKPTALRRHRLIHEVHTDFVCPVCQKGFNSKFYMHVHINEVHFEKRELTKYVCQHCDAEYDTQSELNTHKSVVHTKYRCTCEICGISCSKKSELAVHMRIHTGIKPFACDECGKAFVQYSTLLVHKRSVHSTERPYSCTYCEKSFSLKGTLAKHIEGVHLKDKIEKKFICTFCSKSYLTRSGLKSHTTWHTGERNYICGICGKRFVNNSSLRKHTLIHSDEKQHECQVCSKRFHQKSNLKIHMKVHNKIPQNNVLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00981422;
- 90% Identity
- iTF_00981422;
- 80% Identity
- -