Basic Information

Insect: Aphodius sticticus
Gene Symbol: -
Assembly: GCA_963966075.1
Location: OZ014510.1:42392958-42405306[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0012 0.094 14.6 0.4 1 21 13 33 13 34 0.93

2 17 1.7e-05 0.0013 20.5 2.5 1 23 140 162 140 162 0.99

3 17 6.9e-05 0.0053 18.6 0.4 1 23 168 190 168 190 0.98

4 17 5.8e-06 0.00045 21.9 0.8 1 23 196 218 196 218 0.99

5 17 6.1e-05 0.0047 18.7 2.3 1 23 224 246 224 246 0.99

6 17 3.7e-05 0.0028 19.4 3.6 1 23 252 275 252 275 0.98

7 17 0.0068 0.53 12.3 0.2 1 23 281 303 281 303 0.98

8 17 1.3e-05 0.00097 20.9 0.6 1 23 309 331 309 331 0.98

9 17 8.1e-06 0.00062 21.5 2.3 1 23 337 359 337 359 0.98

10 17 0.00027 0.02 16.7 0.3 1 23 365 388 365 388 0.98

11 17 8.9e-06 0.00068 21.3 0.6 1 23 394 416 394 416 0.99

12 17 7.6e-05 0.0059 18.4 0.3 1 23 422 444 422 444 0.99

13 17 1.9e-06 0.00014 23.5 0.5 1 23 450 472 450 472 0.98

14 17 0.00024 0.018 16.8 0.2 1 23 478 501 478 501 0.98

15 17 2.5e-06 0.00019 23.1 0.6 1 23 507 529 507 529 0.99

16 17 0.008 0.61 12.1 1.2 1 23 535 557 535 557 0.99

17 17 0.00035 0.027 16.3 0.8 1 23 563 586 563 586 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0012	0.094	14.6	0.4	1	21	13	33	13	34	0.93
2	17	1.7e-05	0.0013	20.5	2.5	1	23	140	162	140	162	0.99
3	17	6.9e-05	0.0053	18.6	0.4	1	23	168	190	168	190	0.98
4	17	5.8e-06	0.00045	21.9	0.8	1	23	196	218	196	218	0.99
5	17	6.1e-05	0.0047	18.7	2.3	1	23	224	246	224	246	0.99
6	17	3.7e-05	0.0028	19.4	3.6	1	23	252	275	252	275	0.98
7	17	0.0068	0.53	12.3	0.2	1	23	281	303	281	303	0.98
8	17	1.3e-05	0.00097	20.9	0.6	1	23	309	331	309	331	0.98
9	17	8.1e-06	0.00062	21.5	2.3	1	23	337	359	337	359	0.98
10	17	0.00027	0.02	16.7	0.3	1	23	365	388	365	388	0.98
11	17	8.9e-06	0.00068	21.3	0.6	1	23	394	416	394	416	0.99
12	17	7.6e-05	0.0059	18.4	0.3	1	23	422	444	422	444	0.99
13	17	1.9e-06	0.00014	23.5	0.5	1	23	450	472	450	472	0.98
14	17	0.00024	0.018	16.8	0.2	1	23	478	501	478	501	0.98
15	17	2.5e-06	0.00019	23.1	0.6	1	23	507	529	507	529	0.99
16	17	0.008	0.61	12.1	1.2	1	23	535	557	535	557	0.99
17	17	0.00035	0.027	16.3	0.8	1	23	563	586	563	586	0.98

Sequence Information

Coding Sequence: ATGGACCAAATAGTGGACTCATCTTTGCTTGAAAAGTTTATCTGTAGTTTATGTGGGCTCAAGTTTAGCCAAGAAGAGTATTTAACAAATCATTTCAAGCTTTGCAATGATGTCGAGGATCCTGCCGACAAATTGGGTGTAGACATACTCACTATTAAAAAGGAACTTAACACGGAAGACGAGGTGCGCAGTATGGAATTGTTTGACGACCACACAAAAACTAAAGCGATATTACACATAAAAATCGAAGAAATCGACTTCACCGAAACCACAATTTCTGGTACCACTTCTCCACAATCTGGCCAACGTACGGACAGCCTGAAGACAGAAGCTCCAGAGGAACTGGTTACGTTAACCAAGGGAGACTACACAACGCAGCTTGAAGAGCATGTGGAAGTAGATAAACCAGGGAAGCCATATAGGTGCACCATGTGTGATTATTCTTGTGCATATCAATCAGTTCTAACAGTTCATATGAGAACgcacacaggagagaaaccgTTTAAGTGTACCGTGTGTGACTATGCTAGTGCTCGTCGTTTTGCTCTTACGTCGCATATGAGAGCGCATACAGGTGcaaaaccatttaagtgcaccatATGTAACTATGGTAGTACTCAACTTTCTACTCTCAGAGCTCATATTAGAACGCATTCATCagataaaccatttaaatgcaccatgtGTGAATATGCTAGTAAGCAGCAGAGTAGTCTTACATACCATATGAAAAGTCATACAGGAGCAAAACCGTTTAAGTGCACCATCTGTAACTATGCTTGTACGCGGAATTCTGGTCTTTTATCGCATATGAAGAAGCGGCATTCAGGAGAGAAGCCCTTTAAATGCGCCATATGTGACTATTCTAGTGCTCGTCGTTTTGGTGTCCTAGTGCACATGAAAGGGCATACAGGAGAAAAACCATTTGAATGTACCatgtgtgactatgcttgtgctaGTCGTTCTGCTCTTGAAGTGCATATCAGAAGGCATacaggaacaaaaccatttaagtgcactgTATGCGATTTTTCTTGTGCTGATCAATCAACTTTAACCGTGCATATGAGGCAgcacacaggagagaaaccgTATAAGTGTACCATGTGTGACTATGCTAGTGCCCGTAGTTCGGTTCTCACAGTGCATATTATGAGGCGGCATACGAGAGACAAACCATATAAGTGCACCATCTGTGAGTTTAGCACTGCAAGTAATTCTGGTCTCACAGTTCATATGAGAAGGCATACAGGGGAGAAAGTATTTCAGTGCACCATGTGTGACTATGCTAGTGCTATTCGTTCTACTCTTGaagtgcatatgagaacgcatacgggaacaaaaccatttaagtgcgccatatgtgactatgcttgtgctgATCAATCAAATTTAATCGTGCATATGAGGCAgcacacaggagagaaaccgTATAAGTGTACCGTGTGTGACTATGCTAGTGCTCGTAGTTCGGTTCTCACAGTGCATATTATGAGGCGGCATACAAGCGACAGACCATATAAATGCACCATCTGTGACTTCAGCACTGCAAGTAATTCTGGTCTTACAGTTCATATGAGAAGGCATACGGGGGAGAAAGTATTTCAGTGCACCATGTGTGAATATGCTAATGCAAAAAGTTATCTGGTTAAacggcatatgagaacgcacacAGGAGAGAAACGATTTAAGTGTACCATATGTAACTATGCCAGTGCGTGGCGTTCTGCTCTCAAACGGCATATGAGGCGCCAGCATACATAA
Protein Sequence: MDQIVDSSLLEKFICSLCGLKFSQEEYLTNHFKLCNDVEDPADKLGVDILTIKKELNTEDEVRSMELFDDHTKTKAILHIKIEEIDFTETTISGTTSPQSGQRTDSLKTEAPEELVTLTKGDYTTQLEEHVEVDKPGKPYRCTMCDYSCAYQSVLTVHMRTHTGEKPFKCTVCDYASARRFALTSHMRAHTGAKPFKCTICNYGSTQLSTLRAHIRTHSSDKPFKCTMCEYASKQQSSLTYHMKSHTGAKPFKCTICNYACTRNSGLLSHMKKRHSGEKPFKCAICDYSSARRFGVLVHMKGHTGEKPFECTMCDYACASRSALEVHIRRHTGTKPFKCTVCDFSCADQSTLTVHMRQHTGEKPYKCTMCDYASARSSVLTVHIMRRHTRDKPYKCTICEFSTASNSGLTVHMRRHTGEKVFQCTMCDYASAIRSTLEVHMRTHTGTKPFKCAICDYACADQSNLIVHMRQHTGEKPYKCTVCDYASARSSVLTVHIMRRHTSDRPYKCTICDFSTASNSGLTVHMRRHTGEKVFQCTMCEYANAKSYLVKRHMRTHTGEKRFKCTICNYASAWRSALKRHMRRQHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -