Basic Information

Insect: Aphodius granarius
Gene Symbol: -
Assembly: GCA_963971325.1
Location: OZ020223.1:31725155-31729190[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.3 2e+02 3.6 1.1 3 22 370 389 368 392 0.89

2 12 0.003 0.26 12.7 0.9 1 21 397 417 397 418 0.93

3 12 0.00018 0.015 16.5 0.8 3 23 427 448 426 448 0.98

4 12 0.079 6.8 8.2 0.2 1 23 454 477 454 477 0.89

5 12 0.057 4.9 8.6 0.5 2 23 487 509 486 509 0.96

6 12 1.3 1.1e+02 4.4 2.3 2 19 516 533 516 538 0.94

7 12 0.0042 0.36 12.2 5.1 1 23 543 566 543 566 0.95

8 12 0.051 4.4 8.8 0.5 2 23 583 604 582 604 0.97

9 12 6.8 5.8e+02 2.1 0.1 3 23 609 630 607 630 0.86

10 12 0.0029 0.25 12.7 2.0 2 23 637 658 636 658 0.97

11 12 7.8e-06 0.00067 20.8 1.8 1 23 663 685 663 685 0.97

12 12 0.0082 0.7 11.3 0.2 3 23 693 713 691 713 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.3	2e+02	3.6	1.1	3	22	370	389	368	392	0.89
2	12	0.003	0.26	12.7	0.9	1	21	397	417	397	418	0.93
3	12	0.00018	0.015	16.5	0.8	3	23	427	448	426	448	0.98
4	12	0.079	6.8	8.2	0.2	1	23	454	477	454	477	0.89
5	12	0.057	4.9	8.6	0.5	2	23	487	509	486	509	0.96
6	12	1.3	1.1e+02	4.4	2.3	2	19	516	533	516	538	0.94
7	12	0.0042	0.36	12.2	5.1	1	23	543	566	543	566	0.95
8	12	0.051	4.4	8.8	0.5	2	23	583	604	582	604	0.97
9	12	6.8	5.8e+02	2.1	0.1	3	23	609	630	607	630	0.86
10	12	0.0029	0.25	12.7	2.0	2	23	637	658	636	658	0.97
11	12	7.8e-06	0.00067	20.8	1.8	1	23	663	685	663	685	0.97
12	12	0.0082	0.7	11.3	0.2	3	23	693	713	691	713	0.97

Sequence Information

Coding Sequence: ATGGCTAGTTGTGCTGTTGCTAGCTGTAGCAGTAGAAAAGGCCTCGACAAGAAAGAGAACACGGGAATTTCCTTTCACAAGTTTCCAAAGGATCCTGAGTATCGAGAATTATGGGTGAGATTTGTGAATAGACCCCGGTGGAAACTGACAAACCACAGCGTTATCTGTTCGAAACATTTTTCCAGCAACTATATGGACACTTCATCGCCATGGTATACAAAGATGAAGGATAAGGCTATTCCAACATTACATGGTGATCCAATTAGTATTGAAACTGAAGATTCTTCACATCCTACGAAATTGTCAccgaaaacaagaaataaacGCAAAAAATGTGAAGAAGAACAACCAGATAGTGTGACATCAGAGTCAGCAAAGTCATCTCCAAATCATTTGTCCACATTAAACCATGATTCAGTAACTGAAAGTGTTGATCCACCACATCAAGCTGAAACAAATGCCAGAGAGGACGCTCTTAACACTGAACTTGAtgaaaaattgcaatttttatcTTCTTGGGATTTGAGCAGGATTTGTCGAATTTGTCTGCAAGTCTCCGGTGAGGTGAAATTGCTGGAGAATCAGTACAATAGCGTTAATTACTTCGATATTCTAGAAGAAATCGCTTGCTTAAAGTTGAAGAGAGAGAAACCTTTATCGGTATGCACAGTTTGCGAGGACAGCTTAATAAAAGCGTACACCTTCAAACTGCAAACGCAAGAATCCGAACACACCTTAGAAAAGCTGGACGAACAAAAAGCGAAACAAATACCGCTTCTCGATCACGATTACGGTTTTACACCTTCCACTTTAGCAACTACTCTTATACAAAGCGTTCAAGCAACACCCGTCACCAATCCAAAAAAGATATACTTATTCGTAAGCAGCGTTGAAGGTGACGTCAACTCCGGACAACTCGTGCAGATTAATAAAACAGCTCCCGTCATAAATAACCGTTATCTTACCAAACGAGCTTTCCAACTTGCCAGAGCCGGTCATCTGGAAGAAGCCAAGAGACTAACAAAAGATCTTGCAAAAATTCCAAAACGTCTCTTAAAAATTCTCAATCGTAAACCAAAACGGGAAAAAGTCACTTATCCGACCGATTGCAATACTTGCGGGGATCATTTGGAAACAGAAGAAGACTATAAGAAACACGTGCGATTAACGAAACACTTCCACACGCCGTTTCCGTGCGATCACTGCTCGAAAGTTTTTCCCTCGGAGAAGACTTTGGATTCGCACAAGAAAAATCTACTGTTGCAGACGAGTAAGTTGTGCGATAAGTGTGGGGCCAGCTTTAGTACGACAAGCGGGTTGCATAGCCACGTTAGGGTGATGCATACTGGACGGGAAAAGTACAAGTGCGGAGTTTGCGGAAAGGTGCAGGCCGATATGCGGCGTTTGAAGAGGCATCGGGTTTTGGTGCATCCGGGGGTTCACATGCCGAAGACGAAGGTTTGCGAGTTTTGCGGGCTGAAGTTGGGATCGAAGGCTTCGCTCAGTACGCATAAGAAACGGGTTCATTTCAATATTCGGCCCGCAAAGTGTATGTTGTGTGACGCAAAATTTCACACCGGCCACCAACTACGAAAGCACGACAAAGCGATACACAGCATGGAAACGTTCGACTGCGGCTTCTGCAACAAATCATTCAAACACCAAGAAAAATTCGACAGTCACCGCAGGCTGCGTCATCCGGCCCTCCCCAAAGATGCAGACGTCTCCGAGGAGCAAACTCCCAGCCAATGCACGATCTGCGAAGGCCTATGTCCCAATAAACAAGCCCTATCCGTACATATGAGAGAACACTCCATCGACGTTTGTATTTATTGCGACGAAATATTCCAAGACGACGAAGAATTGGGAAACCACCATTTGGACCAACACGAAGACACCTCAGAGTGGACGTGCCGATACTGTAATAAATGTTACGAGGACGGCGACAGTTTATATTCGCACTTAACGACGCACAAATATCGGTCGTTTAAGTGCGAGGAATGCCCGAAAATGTTTGATACGTCGAATAAGTTGAAGAGGCATAAGATGTTGCATGATGGTGTGGCGAATTATGGATGTCAGTTTTGTCCGAAAAGATTTGTTTATAGTTCGAGTGCGGTGATTCATGAACGTATCCATACGGGGGAGAGGCCGTATAAGTGTGATATCTGCGGTTCGAGTCATATATGCGCGAGCTCGAGAAGTAAACATCGTCAGACGCATTTTATTGATACCGAGGATAGTCTCACCATGGAGATCTTGGCTACGGAAGTTGATGCGATGAAACATCTTTGA
Protein Sequence: MASCAVASCSSRKGLDKKENTGISFHKFPKDPEYRELWVRFVNRPRWKLTNHSVICSKHFSSNYMDTSSPWYTKMKDKAIPTLHGDPISIETEDSSHPTKLSPKTRNKRKKCEEEQPDSVTSESAKSSPNHLSTLNHDSVTESVDPPHQAETNAREDALNTELDEKLQFLSSWDLSRICRICLQVSGEVKLLENQYNSVNYFDILEEIACLKLKREKPLSVCTVCEDSLIKAYTFKLQTQESEHTLEKLDEQKAKQIPLLDHDYGFTPSTLATTLIQSVQATPVTNPKKIYLFVSSVEGDVNSGQLVQINKTAPVINNRYLTKRAFQLARAGHLEEAKRLTKDLAKIPKRLLKILNRKPKREKVTYPTDCNTCGDHLETEEDYKKHVRLTKHFHTPFPCDHCSKVFPSEKTLDSHKKNLLLQTSKLCDKCGASFSTTSGLHSHVRVMHTGREKYKCGVCGKVQADMRRLKRHRVLVHPGVHMPKTKVCEFCGLKLGSKASLSTHKKRVHFNIRPAKCMLCDAKFHTGHQLRKHDKAIHSMETFDCGFCNKSFKHQEKFDSHRRLRHPALPKDADVSEEQTPSQCTICEGLCPNKQALSVHMREHSIDVCIYCDEIFQDDEELGNHHLDQHEDTSEWTCRYCNKCYEDGDSLYSHLTTHKYRSFKCEECPKMFDTSNKLKRHKMLHDGVANYGCQFCPKRFVYSSSAVIHERIHTGERPYKCDICGSSHICASSRSKHRQTHFIDTEDSLTMEILATEVDAMKHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00136929;
90% Identity: iTF_00136929;
80% Identity: iTF_00136929;