Basic Information

Insect: Aphodius granarius
Gene Symbol: Rreb1_1
Assembly: GCA_963971325.1
Location: OZ020222.1:38905312-38911393[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.062 5.3 8.5 2.0 1 21 85 105 85 107 0.94

2 16 9.5e-05 0.0082 17.4 0.7 1 23 119 141 119 141 0.97

3 16 1.4e-05 0.0012 20.0 4.7 1 23 147 169 147 170 0.96

4 16 7 6e+02 2.1 0.4 1 21 227 248 227 251 0.72

5 16 0.0019 0.16 13.3 1.4 2 23 257 279 257 279 0.97

6 16 0.45 38 5.8 0.4 1 21 327 347 327 348 0.89

7 16 0.084 7.2 8.1 0.1 1 23 463 485 463 485 0.96

8 16 4.3e-06 0.00036 21.6 0.6 1 23 494 516 494 516 0.99

9 16 0.0021 0.18 13.2 3.6 1 23 522 545 522 545 0.97

10 16 0.00096 0.083 14.2 2.1 1 23 855 878 855 878 0.95

11 16 0.00058 0.05 14.9 0.4 2 23 1063 1084 1062 1084 0.97

12 16 0.13 11 7.5 6.8 1 23 1090 1113 1090 1113 0.97

13 16 0.0049 0.42 12.0 2.4 1 23 1140 1164 1140 1164 0.94

14 16 6.2 5.3e+02 2.2 3.7 1 23 1195 1218 1195 1218 0.90

15 16 0.019 1.7 10.1 0.4 3 23 1266 1286 1264 1286 0.93

16 16 2.1 1.8e+02 3.7 8.3 1 23 1292 1314 1292 1314 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.062	5.3	8.5	2.0	1	21	85	105	85	107	0.94
2	16	9.5e-05	0.0082	17.4	0.7	1	23	119	141	119	141	0.97
3	16	1.4e-05	0.0012	20.0	4.7	1	23	147	169	147	170	0.96
4	16	7	6e+02	2.1	0.4	1	21	227	248	227	251	0.72
5	16	0.0019	0.16	13.3	1.4	2	23	257	279	257	279	0.97
6	16	0.45	38	5.8	0.4	1	21	327	347	327	348	0.89
7	16	0.084	7.2	8.1	0.1	1	23	463	485	463	485	0.96
8	16	4.3e-06	0.00036	21.6	0.6	1	23	494	516	494	516	0.99
9	16	0.0021	0.18	13.2	3.6	1	23	522	545	522	545	0.97
10	16	0.00096	0.083	14.2	2.1	1	23	855	878	855	878	0.95
11	16	0.00058	0.05	14.9	0.4	2	23	1063	1084	1062	1084	0.97
12	16	0.13	11	7.5	6.8	1	23	1090	1113	1090	1113	0.97
13	16	0.0049	0.42	12.0	2.4	1	23	1140	1164	1140	1164	0.94
14	16	6.2	5.3e+02	2.2	3.7	1	23	1195	1218	1195	1218	0.90
15	16	0.019	1.7	10.1	0.4	3	23	1266	1286	1264	1286	0.93
16	16	2.1	1.8e+02	3.7	8.3	1	23	1292	1314	1292	1314	0.98

Sequence Information

Coding Sequence: ATGCAAGGGAACATATGCATACCACTAAACATCGAGAACGGATCAAGTCCAACACATCCAAAGAGTTCAGAACCCAATGAGGAAATCATGGATCTGACAACCGAACACAAAACCAAAGAAATCTTACAAAACCAAAGCGCCAGGACCACAGATTCTGGCTTTTTATCGGCATCTAACCATACCAATTACACAGCTGACCACCAAAGCGACTCCGATAACAGGAGTGATTGCAGCTCACCTGAAAAGATTAAACATCCTTGTCCAATATGCGATCGTCTGCTTACAGGGCAGCACGAGTTAACACTACACATACGTTGCCATAACAATGACAGCGAAACACAACCAGAGAAAGGTTTCGTCTGCAAGATTTGCGATAAAGTACTATGTTCAAGCTCCAGTTTAGACCGCCATGCTTTAGTCCATAGCTCAGAACGTCCTTTCTCATGTTCTGTATGCGGTGTCACCTTTACAACGAACGGTAACATGCATAGGCACATGAAGAAGCACCACTTGAAGAATGGCTACGAGTCAGACAGTGGTGGCAGTTCTGACAGCTCTGGTAGCTCTAGAAAAGTTGAATTCAACAATAACCAAGTGGATAAAGGTGTTAAAAGAAAACTCGAAGACATGGAAGAATTTAAAAACGCCAGAGTTAAAATGGAAATTGATGAAGAGCAATACAAATGTCCACTCTGCGAGAGGGACGACTTCACGAGTCTGCAAACCTTCAAGCTCCATCTAGCTGAGAACCATCCCGAACATCCAGCGGAATGTTCGCAATGTAAACAGACCTTCCCGAACCATAAAGCGTTGAATCTGCACGTTAACACCGTCCACGCCGATCAAAACGGTAAATTGAAGACCTCGATCCACGGTTTTAAAGATTTGACGCACTGGGATTTCTCGAGCGAGAAATTCGCGCAAATCGCGAAGAGCAAATGCGAGGAATTCGTCCATAAACCAGCTTCTGATATCAGGTTTCAATGCCAGGAGTGTTCCAGGGCGTTCCCGTGCGCTGCTTCCTTAGATCTACACCAGAAGGAGTGCTCATCGAGTGCGAATCAAACGTTTCCGCCGAAATACGATCCTAGCATCCTCAAGAGGAAAGAATTCTTTAACATCTTGGATTTAAAGGATAACTCGAGCGAGAAACTACCGATGTTTCCCAAGGCGATCCTCCAGAATGCGTTGAGGCCTTCTTTTGACCACACCAAAGATTTAGCTGATATCCCAACGATTATTTCGATGGCCAGTAATGGGAGCTTCATGCAACACCTGGCCAAGAGTGAAACTTCGTGTCATAGTGAGACCCAGGAGAGGACTGACGAAGAGGAAGCACAAGACATCTTCGCCATTGAGTTTAGGAAGATGAAATTGCGTGGGGAGTTCCCGTGTCGTCTTTGCACTGCGGTCTTCCCAAATTTACGAGCGCTCAAGGGGCATAATAGAGCTCACTTGAACGGGAACAACAACGGGACCTATCAATGCAATATGTGCCCTTACTCATCGCAGGATAAATCAGCGTTGGTGAGACATATGAGGACGCATAATGGTGACCGGCCTTACGAGTGTTCTTTGTGTAAGTATGCCTTCACCACAAAAGCGAACTGCGAGAGGCACTTGAGGAATCGGCATAATAAGAACACTAGGGACGAAGTGAAGAATTCGATTATTTACCATCCATCTGAAGACCCGACTAACGATGACTTGAATAAGTTGGCTAGAGATGACCCGAAGAAATTGAATAGTAGCTTTACTTCGAATGCTGATAGTGAAGACGCTATGAGAAGCTCAACACCAAAGGCCGAGTTTAGAAGAAATGATATTCCCAATCCGTTACCATGGACAGGGCATGGACAAACTCCATACCCTAACATCAATGACATCATCTCTGGTGAGAACCTGAAGTCGTTAAGCGAGCAGATCCCAACTCTTCAGAGTAGGTTCCAATTCAATCCGACAATCACCAATACATCCACTCCTCAAAAGCCCAAGATCCACGTGAAAACCCTCGATACCCTCAAGCAAATCCCTGAATACGAGAGCGACCAAGACTACGACAAACCCATCGATTTAAGCAAGAAAAAGGTGGAATATTCCGACACCGAAGAAGAACAAGAATCACCTGAAGACCTCACCAGTAAAATACCGGAGACACCACCACCACCTTTCAACATCCTAGCCCAGCAATTACTCAAGAACCACCAACTGGCCATGATGCAAACGTTCCCATGGGCCCATCCTTTCCCACCATTACTCTTCCCTCTCCTGCAAGACGAAAGATTTACTCGTCCAAACCCTAACATCGAGAATCGTCTAAACATCGAGAATCGTTTTCCTGCGCAATCCATGTACCCAACCTTTCCAAAACACGAGGAGATCAGCAAACCGTTATCGGTGAATATCGATCCGAGTTTTGCCGAGAATATCTCGAAGATGCAAAGCCCTATCCCCCAGGGGAAACCTGATGTGTCACACTCACCAAACTCGGTGAAGATGGTGATCAAAAATGGGGTTCTCATGCCTAAACAGAAGCAGAGGAGATATAGAACCGAACGGCCGTTTGCTTGCGAGCATTGCTCTGCTAGATTCACGCTGAGGTCGAATATGGAGCGGCATATCAAGCAGCAACATCCTCAGTACTACTCGCAGAGGCAGCGTTCGAATTCGAATGTTGGGAGGAAGAGTAATGGTGTGGCTAATTTGACGGTGCCGAGTTTTGAGGTACGTCAACACGAGGACGACAACAAAAACCAGATTTCGGATGAGTTGAAGTATGCGATTCTAGCGCAGCATCTCAGGGCGAACCAGTTGGCACCACCGGTTGTGAAAAAGGAGGAGGATGATGATTGTGCTTTGGTTATCGATGAGAACGAGGATAAAATGGATACTGATGAGGAATTTGATCGGAGGAAGGACGAGAAACGGAGTGAGGATGGCCAGGATTTGGTACCAGTCGCTAGGTTGGTGAATAATGCGTTCCAACAGCCTTTTAAGGAGTACTTTAAGAGTGACAGGGAGGACCATGATCAGGATATCGCCTCTGAAGAGGACGAGGAAGGATTGGTAGCCAGTGGCAGCACCAGTGAAGCTAACTCAGGCTCGGATGAGAATAAATCTGATAACCCGGATAGCGGCCGCCCTGTCAAGAAGAAGTCCGCTTACTCCCTGGCACCAAACCGAGTGAGCTGCCCATACTGCAGTCGAAAATTCCCATGGACCTCGTCCCTACGACGCCACATCCTCACCCACACCGGTCAGAAACCGTTCAAGTGCTCCCATTGCCCACTGCTCTTCACCACGAAGTCCAACTGCGACAGACACCTGCAAAGGAAGCACGACAGTGCCGCTTCGACAATCCCAAACGATTCCAGCACCAGCAACGCGTTCCTCATGAGGAACGTCCCAGAAAGACCTTACAAATGCTCCACGTGTCCAAGCAGCACCTTTTCGACCGCTTCCAACTTGAAAAAGCACATCCACGGCAAGCATAGCTACGAAAGTTCCGAAGACGAGAAACATGGCGATTGGGATGTCCATAAACCCGGCCAAGAACAACCCGGAAGCTCTTCTGACCTACCATTTAAGTGCCACTTGTGCGAGGGTTCTTTCTCCGAGAGGAACGATTGTTTGGACCACATCAAAGACAAACATCCTTCCGAATATGACTTGCTCATGTCAAAAAACGCCTTGGATAGCACCACGTCACCTCCTGAGGACTCCTCCAACAACCACGACGAAGAAGACATCGAAATCCGTGGAAAATTCCCGGATTACTCGAATAGAAAGGTGATCTGCGCGTTTTGCATGCGGAGATTTTGGTCGGCTGAAGACTTGAGACGTCATATGAGGACCCATACTGGTGAACGACCGTTTAGTTGCGACATCTGCTGTCGGAAGTTCACTTTGAAGCATAGCATGCTCCGCCATAGGAAGAAGCACACCTCAACTGAAGGCGATCTCGCAATCAGCGATGAAGATGGCAACCCGAGCGTGGAGAAAACCAagacccaaccaaacccaaccatGGAGAAAACCGACGAGTCGGATGGTGGTAACGAGAGTGGCGATCTGATTAGTAACCTATTGGGTATAGGTGGCGCCATGGTAGACCAGATTATAACCTCAACTCCGGATGATGCCGCGAAATTGCTTGGTGTTAAGAATGGTGGTATCCCTGAATAA
Protein Sequence: MQGNICIPLNIENGSSPTHPKSSEPNEEIMDLTTEHKTKEILQNQSARTTDSGFLSASNHTNYTADHQSDSDNRSDCSSPEKIKHPCPICDRLLTGQHELTLHIRCHNNDSETQPEKGFVCKICDKVLCSSSSLDRHALVHSSERPFSCSVCGVTFTTNGNMHRHMKKHHLKNGYESDSGGSSDSSGSSRKVEFNNNQVDKGVKRKLEDMEEFKNARVKMEIDEEQYKCPLCERDDFTSLQTFKLHLAENHPEHPAECSQCKQTFPNHKALNLHVNTVHADQNGKLKTSIHGFKDLTHWDFSSEKFAQIAKSKCEEFVHKPASDIRFQCQECSRAFPCAASLDLHQKECSSSANQTFPPKYDPSILKRKEFFNILDLKDNSSEKLPMFPKAILQNALRPSFDHTKDLADIPTIISMASNGSFMQHLAKSETSCHSETQERTDEEEAQDIFAIEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNNNGTYQCNMCPYSSQDKSALVRHMRTHNGDRPYECSLCKYAFTTKANCERHLRNRHNKNTRDEVKNSIIYHPSEDPTNDDLNKLARDDPKKLNSSFTSNADSEDAMRSSTPKAEFRRNDIPNPLPWTGHGQTPYPNINDIISGENLKSLSEQIPTLQSRFQFNPTITNTSTPQKPKIHVKTLDTLKQIPEYESDQDYDKPIDLSKKKVEYSDTEEEQESPEDLTSKIPETPPPPFNILAQQLLKNHQLAMMQTFPWAHPFPPLLFPLLQDERFTRPNPNIENRLNIENRFPAQSMYPTFPKHEEISKPLSVNIDPSFAENISKMQSPIPQGKPDVSHSPNSVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQYYSQRQRSNSNVGRKSNGVANLTVPSFEVRQHEDDNKNQISDELKYAILAQHLRANQLAPPVVKKEEDDDCALVIDENEDKMDTDEEFDRRKDEKRSEDGQDLVPVARLVNNAFQQPFKEYFKSDREDHDQDIASEEDEEGLVASGSTSEANSGSDENKSDNPDSGRPVKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLQRKHDSAASTIPNDSSTSNAFLMRNVPERPYKCSTCPSSTFSTASNLKKHIHGKHSYESSEDEKHGDWDVHKPGQEQPGSSSDLPFKCHLCEGSFSERNDCLDHIKDKHPSEYDLLMSKNALDSTTSPPEDSSNNHDEEDIEIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRKFTLKHSMLRHRKKHTSTEGDLAISDEDGNPSVEKTKTQPNPTMEKTDESDGGNESGDLISNLLGIGGAMVDQIITSTPDDAAKLLGVKNGGIPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -