Agra025897.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- zfh1
- Assembly
- GCA_963971325.1
- Location
- OZ020228.1:4692040-4697533[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0038 0.33 12.3 0.2 2 23 56 78 55 78 0.96 2 9 0.00016 0.014 16.7 0.2 1 23 107 129 107 129 0.95 3 9 4.2e-05 0.0036 18.5 1.1 3 23 137 157 136 157 0.97 4 9 1.8e-06 0.00016 22.8 5.9 1 23 166 188 166 188 0.99 5 9 7.8e-05 0.0067 17.6 1.0 1 21 194 214 194 215 0.95 6 9 0.0063 0.54 11.6 1.6 1 20 414 433 414 435 0.93 7 9 3.5e-05 0.003 18.8 1.2 3 23 765 785 763 785 0.94 8 9 0.00019 0.016 16.5 9.4 1 23 791 813 791 813 0.98 9 9 0.0038 0.33 12.3 4.4 1 21 819 839 819 840 0.96
Sequence Information
- Coding Sequence
- ATGGTTGCCCGTAGTGATATGATGTTTGGTGGTTGCTATGACAGCTACTATTCATATAAGTTGTGGAGTTTGGCAAATGTTTGGCATTCCGTACAATTACCGGGGGCTTTGAATGGTTTAAAACCGGAACCCGAGGAACTGTCACCGGGTCAAGAATACTTCATGAAATGCCCACAATGCCAAAAAGGATACCAAACGTACCAAGGACTGAAAGACCACATAGAATCCGCTCATGGAGACATGCTCTCCATGGAGAACGGATCAGTTTCATCAAATCCTTTATCTCCAACGACAAATCTATCGGGATCGGGAGGTCCATATGCATGTTCCCAATGTTCagcttcattcgcgaataaggACCAACTGGAAAAACACGAATTACTTCATTCGCCAAATCCACAAGTGTTCTGCAAAGTTTGCAATAAGACTTTTGCCAACGTCTACAGGCTACAAAGGCACATGATTAGCCATGACGAAAGTGCTGTACTTCGGAAATTCAAATGTACAGAATGCGACAAAGCTTTCAAATTCAAGCATCACTTAAAGGAACACATTCGGATCCACAGCGGCGAAAAACCTTTCGAATGCGGAAATTGTGGAAAACGATTTTCCCACTCTGGATCCTATTCAAGTCATATGACCTCAAAGAAATGCCTGGTCATGAATCTAAAGTTAGGAAGGACCAGAGCGCCGAATACGACTAACTTAGAGAAATCATCTCCATCTCCCAGAGGTCCAAAACGAAATTCCCTAAACAACAATTTGGCGACGAGTCCAAACCAAAACGGGATGTTCCCGATTTTGCCGAAATACACCGACGCCGCGACGGCTGCGGCTTTGTTCAACCCATTCTACATTAGTCCGCCAAATATGCCAATTCCGCCATATTCCATACCCACCATCGGAGAATTCCTGGAGAAGTTACAGAGAGTGTCTCCGCAGACTTCAGGCGTAAATATCATGGAGAATGATGAGAGGAAGAACGTCGAAGAGAGCGATGGAGAATTAGATAAAACGAAGTCGTCGAGTTGTGGAGATTTAGTTATGGACGAAGAAGAAATCGAAGTTAAAGACGAGGAGGAGGAGAAGAATAACGGCGATTTAGAAGCCGTTAAGAGAATTCTGGAAACCGTAAACGTTTCTGTAACGAAGCAATTCCTACAGGCGAACATGCAAAAATACTCATCAGACACTTCAGATTGTAACAGTGTGGCTTCTGCGCAATCCCCGCAAGCGATTTTCAACTGTAACAGTTGCAGGAAAACGTTTCCAACGCAAAATTCGTTAGAGGAACATGAGTGTGATTCCTCGGAGGTAAAAAGTGAAGGTTTAGCCGCGAAATTAGAAGACGCATTGACGACCAAATCAGAAAACGACGCCCAGAACGGTAGTTTCAGTGGGAACTCGGATGAGGAATACGAGAAACATCATAACGACGAAGAAATCGATAACGAGCGTGTCGCCACCACAGATCAATTATCCGACGATGGCCGAAAAGTCAGGGTTCGCTCGCTGATCTCCGACGAGCAATTGAAAGTCTTGAAGGATAACTACGCGATCAATCCAAGACCAAAACGCGAGGATCTGACGAGAATAGCCGAGCAGATTGGTTTTCCGGTACGCGTCGTCCAAGTTTGGTTCCAAAATACGCGGGCTAGAGACCGGAGGGAAGGCAGACTAATCCAAATACCTTACAACCAACCACGTTTTCCCGTTTCCCAAACCTCGCAATACTTCCCTCAACCTACTTCCTACTCCTCCGAGCAACCTTTAGACCTTTCCATACGCAAAGACACTTCCAGAGACTCCTCCCCGTGGAGTTCGCCCAGACCTACTTCCATCCACCATTCCGATTCCGAAGACGTCGTCAACTTGAGTCATAAGTCGTCGAGATCTCCGACACCCTTCCAGCATTCTTCCTATCAAAACTACCAGAACTCGAATTGTTCATCGGAATTACGAAGGAGCCCATCGCCGATCGATTTTAAGAATGGACAAAGTCGCCTAGCTCAAATACTAGCCCAGCCTTCTCACAAACTACCATTGCCAGGGATGAGTTTGGTTCCAATGGATAGACTGATGCAGTTCGGAAATCAAGAGTTGCAGAACTTCAGCCAGATGATCACGAATCTCAGTCCTTCGAACAAAAGGTCTTGGTCTGATGACGGAGACGCCACCCAGGAGAGTGCCGATGACGAGATGAACTCCAAGAGAAAAGTTGGACAGTTGGTGATGAAGAGTTTGGGGAGTCCAATGTTAGGAAATCAGGAAGAAGCTGAGGGACAGTTTGGATGTGACCAATGCGATAAGTCTTTTTCCAAGCAGAGTTCTTTGGCCAGGCATAAATATGAACACTcagGTCAACGTCCCCATAAATGTGACGAATGTCCGAAGGCATTCAAGCACAAACATCACCTGACCGAACATAAGCGCCTCCATAGTGGTGAGAAGCCGTTTCAGTGTCAGAAATGCTTGAAGCGCTTCTCACATAGCGGTTCCTACAGTCAGCATATGAACCATAGGTATTCCTACTGCAAACCTTACAGAGAATAA
- Protein Sequence
- MVARSDMMFGGCYDSYYSYKLWSLANVWHSVQLPGALNGLKPEPEELSPGQEYFMKCPQCQKGYQTYQGLKDHIESAHGDMLSMENGSVSSNPLSPTTNLSGSGGPYACSQCSASFANKDQLEKHELLHSPNPQVFCKVCNKTFANVYRLQRHMISHDESAVLRKFKCTECDKAFKFKHHLKEHIRIHSGEKPFECGNCGKRFSHSGSYSSHMTSKKCLVMNLKLGRTRAPNTTNLEKSSPSPRGPKRNSLNNNLATSPNQNGMFPILPKYTDAATAAALFNPFYISPPNMPIPPYSIPTIGEFLEKLQRVSPQTSGVNIMENDERKNVEESDGELDKTKSSSCGDLVMDEEEIEVKDEEEEKNNGDLEAVKRILETVNVSVTKQFLQANMQKYSSDTSDCNSVASAQSPQAIFNCNSCRKTFPTQNSLEEHECDSSEVKSEGLAAKLEDALTTKSENDAQNGSFSGNSDEEYEKHHNDEEIDNERVATTDQLSDDGRKVRVRSLISDEQLKVLKDNYAINPRPKREDLTRIAEQIGFPVRVVQVWFQNTRARDRREGRLIQIPYNQPRFPVSQTSQYFPQPTSYSSEQPLDLSIRKDTSRDSSPWSSPRPTSIHHSDSEDVVNLSHKSSRSPTPFQHSSYQNYQNSNCSSELRRSPSPIDFKNGQSRLAQILAQPSHKLPLPGMSLVPMDRLMQFGNQELQNFSQMITNLSPSNKRSWSDDGDATQESADDEMNSKRKVGQLVMKSLGSPMLGNQEEAEGQFGCDQCDKSFSKQSSLARHKYEHSGQRPHKCDECPKAFKHKHHLTEHKRLHSGEKPFQCQKCLKRFSHSGSYSQHMNHRYSYCKPYRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00136730;
- 90% Identity
- iTF_00980840;
- 80% Identity
- iTF_00136730;