Basic Information

Insect: Aphodius granarius
Gene Symbol: -
Assembly: GCA_963971325.1
Location: OZ020226.1:22594281-22598447[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0018 0.15 13.4 0.2 1 20 199 218 199 220 0.95

2 10 2.9 2.5e+02 3.3 1.2 1 23 233 255 233 255 0.96

3 10 5e-05 0.0043 18.3 1.8 2 23 295 317 295 317 0.95

4 10 0.0048 0.41 12.0 0.6 1 20 373 392 373 394 0.92

5 10 4.1e-06 0.00035 21.7 2.3 1 23 416 438 416 438 0.98

6 10 8.8e-06 0.00076 20.6 1.0 1 23 444 466 444 466 0.97

7 10 0.0011 0.091 14.1 4.5 1 19 472 490 472 495 0.94

8 10 4.1e-07 3.5e-05 24.8 0.7 1 23 501 523 501 523 0.99

9 10 6.5e-06 0.00055 21.1 2.8 1 23 529 551 529 551 0.99

10 10 2.4e-05 0.002 19.3 6.0 1 23 557 579 557 579 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0018	0.15	13.4	0.2	1	20	199	218	199	220	0.95
2	10	2.9	2.5e+02	3.3	1.2	1	23	233	255	233	255	0.96
3	10	5e-05	0.0043	18.3	1.8	2	23	295	317	295	317	0.95
4	10	0.0048	0.41	12.0	0.6	1	20	373	392	373	394	0.92
5	10	4.1e-06	0.00035	21.7	2.3	1	23	416	438	416	438	0.98
6	10	8.8e-06	0.00076	20.6	1.0	1	23	444	466	444	466	0.97
7	10	0.0011	0.091	14.1	4.5	1	19	472	490	472	495	0.94
8	10	4.1e-07	3.5e-05	24.8	0.7	1	23	501	523	501	523	0.99
9	10	6.5e-06	0.00055	21.1	2.8	1	23	529	551	529	551	0.99
10	10	2.4e-05	0.002	19.3	6.0	1	23	557	579	557	579	0.96

Sequence Information

Coding Sequence: atggaaAATGAAAGTCAAGAATTATTGGACGGGGTTACAATTAGCGATGTGAGCGGTTCCCAATATATGATTCAGCCAATTCCTAGGATGGATAGCCAACAATTGCTGAGTTCTGAGTTGCTACAACATCATACGGGGTTGGTTGTTGACCTAGGTGCTGGAGATTTTATCCCGGTAACTTATGGATCCGAAGAGTTATTACCTCAAGATTTAACCGAGGAAGACAGAAATTTAGCGGCTGCTTTAGTAGCCGTACAACTCAGTCAACAACAAAAACACCACTTACCGACTGAAGGTAACGTTATGATAAATGGAATACAACCGTTATGCTCCGACCTTCACATCGTCGACTCAGAAAACATCTACAAACAAAATTTGATACCGAAATTATGTTTTGATTCACGGGACTTTACCCCGGGGGACGTCTATGATCGTAACGAAGAAATCTTGTCGATTAAATCCGAGAAGGAAATCGAATTAGCCGCTTCGGATGGGGAACATAAATCTGACAGCCGTACCTTAAAGAAAAGCTTACCTCATAAGAAAAGAATCTCGAGGAAACTACGAAAAAATAGTTCAAGTATTCGTAAAATTTATAAGTGCTCCCTCTGCGAACAggtttttaataataatgaagAAATTACGACGCATCAGAGCTTATGTCAGACGACCATAACCCCGATAAATCAAGCTTTATTCACTTGTCAATTGTGCAGTGCAAATTATCAAGACCAATTGAGGTTTTTCGAACATTTGAAAGAACATTATGAGCCGAATATTCTCGTAGAGCAGACGATGACTGTTGTTGAAAAGCCTAAAAATCAATACAAACAACATACGCCGATAAAGCAGCAAGAGAACATAATGTCGACTATTATTAATACGTGCCTGGAATGTAATAAAACGTTTAGGAGGCAGAAAACGTTTGAGGCCCATGTTAGAGAGTTCCATAGTAAGGATGTACTGCAAGAATTTAGCGAACCGGAAGATCTTATGTCGGATATTGATGTTAATAGTTCGGTACAGCCTGTTGTCGTAGACACAAAAGAATGGTACCACAGAGAAGATGAACTACAAGCAACAGAAGAAGACCTAAGGGAACTAGAAGCCCAAGACTATGTCTGTCACATTTGCAAGAGACAATTCGCGATGCGAGCTGAACTCCACGAACACTCCCTAACGTGCAAAGAACTAGACACCATCGAAGTAAAAACCGAAAAGAAAAGCAAGAAAAAAGTTGTCGAATTCAAATGTACCGAATGTCCCAGAGTCTTTAACCACAAGAACTCCCTTGTCTACCACATGAGAGGTCACACTGGCGTCCGACCCCACACTTGCGACCAGTGCGGTAAAAGTTTCTTCGCCGCTAGTGCCCTTAAAGTACACCAAAGGCTACATTCGGGTGACAAGCCATATTGCTGTGAGTATTGCGGGAAATATTTTAGACAATGGGGGGACCTCAAGTACCATTGCGTCTCAATACATTCTGACCATAAACAGTATCAATGTGATTTTTGTGGCAAAGACTTTGCCAGAAAATATTCCCTAATAGTTCACCGTAGAATCCACACAGGAGAAAAGAATTATAAGTGTGAATTTTGCTCCAAAACGTTTAGGGCTTCGTCGTATCTACAAAATCATAGACGGATACATACAGgtgAAAAACCTCATTGTTGTGATACTTGTGGTAAACGATTTAGGGTACGTTCAGATATGAAGAGGCATATGTTGACCCATAACAGGAAACGCGGTAGACCTGGTGAGGCGTCGGGTAATAAAGACGACCATAAAGATCAGGATAATGTCGAGACGATTCTTCCGGATGAGGAATACAATGATCAATTCAACAAGGATATTTCGGAAACTTCTCCTGCAATGCAGGAATTACAGTACGAGCAGGACCCTCTTGACGGAATAAGAGACTCGAGCACCCTGTACGTTATGCCTATTTTAATCTCGTAA
Protein Sequence: MENESQELLDGVTISDVSGSQYMIQPIPRMDSQQLLSSELLQHHTGLVVDLGAGDFIPVTYGSEELLPQDLTEEDRNLAAALVAVQLSQQQKHHLPTEGNVMINGIQPLCSDLHIVDSENIYKQNLIPKLCFDSRDFTPGDVYDRNEEILSIKSEKEIELAASDGEHKSDSRTLKKSLPHKKRISRKLRKNSSSIRKIYKCSLCEQVFNNNEEITTHQSLCQTTITPINQALFTCQLCSANYQDQLRFFEHLKEHYEPNILVEQTMTVVEKPKNQYKQHTPIKQQENIMSTIINTCLECNKTFRRQKTFEAHVREFHSKDVLQEFSEPEDLMSDIDVNSSVQPVVVDTKEWYHREDELQATEEDLRELEAQDYVCHICKRQFAMRAELHEHSLTCKELDTIEVKTEKKSKKKVVEFKCTECPRVFNHKNSLVYHMRGHTGVRPHTCDQCGKSFFAASALKVHQRLHSGDKPYCCEYCGKYFRQWGDLKYHCVSIHSDHKQYQCDFCGKDFARKYSLIVHRRIHTGEKNYKCEFCSKTFRASSYLQNHRRIHTGEKPHCCDTCGKRFRVRSDMKRHMLTHNRKRGRPGEASGNKDDHKDQDNVETILPDEEYNDQFNKDISETSPAMQELQYEQDPLDGIRDSSTLYVMPILIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00138392; iTF_00981490;
90% Identity: -
80% Identity: -