Basic Information

Insect: Aphodius granarius
Gene Symbol: -
Assembly: GCA_963971325.1
Location: OZ020226.1:11746460-11749401[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 9 7.7e+02 1.7 0.0 10 23 59 72 56 72 0.88

2 13 0.00011 0.0099 17.1 0.4 1 23 117 139 117 139 0.98

3 13 4.5e-06 0.00039 21.5 0.8 1 23 145 167 145 167 0.98

4 13 0.022 1.9 10.0 3.4 1 23 173 196 173 196 0.95

5 13 0.00044 0.038 15.3 4.4 1 23 202 224 202 224 0.98

6 13 1.1e-05 0.00092 20.4 1.6 1 23 230 252 230 252 0.99

7 13 0.0012 0.1 13.9 6.8 1 23 357 379 357 379 0.98

8 13 0.00031 0.027 15.8 1.5 1 23 394 416 394 416 0.98

9 13 1.1e-06 9.8e-05 23.4 1.7 1 23 421 443 421 443 0.99

10 13 0.00032 0.028 15.7 1.6 2 23 450 471 449 471 0.98

11 13 1e-05 0.00088 20.4 0.7 1 23 477 499 477 499 0.98

12 13 0.00026 0.023 16.0 0.8 1 23 505 527 505 527 0.99

13 13 0.036 3.1 9.3 1.0 1 23 533 555 533 555 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	9	7.7e+02	1.7	0.0	10	23	59	72	56	72	0.88
2	13	0.00011	0.0099	17.1	0.4	1	23	117	139	117	139	0.98
3	13	4.5e-06	0.00039	21.5	0.8	1	23	145	167	145	167	0.98
4	13	0.022	1.9	10.0	3.4	1	23	173	196	173	196	0.95
5	13	0.00044	0.038	15.3	4.4	1	23	202	224	202	224	0.98
6	13	1.1e-05	0.00092	20.4	1.6	1	23	230	252	230	252	0.99
7	13	0.0012	0.1	13.9	6.8	1	23	357	379	357	379	0.98
8	13	0.00031	0.027	15.8	1.5	1	23	394	416	394	416	0.98
9	13	1.1e-06	9.8e-05	23.4	1.7	1	23	421	443	421	443	0.99
10	13	0.00032	0.028	15.7	1.6	2	23	450	471	449	471	0.98
11	13	1e-05	0.00088	20.4	0.7	1	23	477	499	477	499	0.98
12	13	0.00026	0.023	16.0	0.8	1	23	505	527	505	527	0.99
13	13	0.036	3.1	9.3	1.0	1	23	533	555	533	555	0.98

Sequence Information

Coding Sequence: ATGGAGAATTCTACAGATTGTACGTTTGAAACGGTTATCGTGAAATGTGAACCATTTGACGAGAGCTTTGAACAGACGGAAACATTTGACGGACAGTCAATAACCGATACACTaagTGATATAAAACAAGAAGTAGTTGAATTTGAGGATACTGTAGATTCTGATAATGCTCCCACCACAAACAGCTCTGACCTTATGGTGCATACGGGACGGCACACGGAAGAGAAACCGCATAAaaGTGATATAAAACAAGAACTAGTTGAATTTGGGGATACTGTGGTTTCTGATAATGCTCCTGCTACAAACAGCTCCGACTTTACGGTGCATACGCTTACTGAAGAGAAACTGCATAAGTGCATGCTCTGTGACTATGCTGGTGCGCAAGCCAGCAATCTCAAATGGCACATGCTCAGACACACGGACCAGAAACTATTTGAGTGCTCGATTTGTGACTATGTTACCATAAGAAAGGGCGACCTTACGGTGCATATGCGACATCATTCCAGCGAAAAACCGCACAAGTGCTTCGGTTGTGACTATGCTACTACGAATTATACCTCCCTTAAATACCACGTTCAGCAGAAGCATACCATGGAGAGACCATTCAAGTGTGAGACCTGTGACTATGCTTGTGTAAAACGTTCGCATCTAGAAGTGCATAAGAGACTGCATTCCACGGAAAAACCTTATAAATGTAGTACTTGTGGCTATGCTACTAACAGAAAATTTCTTCTTACGGTGCATATGCGACAGCACACAGGGGAAAAACCATATAAGTGCGGTTTTTGTGCCTATGCAATTACCGTGAAATGTGAACCATTTAATGAGTGCTTTGAACAGACGGAAACATTTGATGGACACCCACTAACCGATACACTAATTGATATAAAACAAGAAGTGGATGAATTTGGAAATACTGTAATTTCTGATAATGCTTCCGCCACAACTTCAACGACACAAGAAATCAAGATTGAAATTGTACAGATCCAGTTAGAACATAGCTACTCAGCTGCACAGTCTGAACATGTCGAGGACTATTATAGAACAGTGCATAAGACAGAGAAACGACACAAGTGTCACATTTGTAACTACACCACCACGCATCCGACATTCCTAAAAGCTCATTGGCAAACGCACAAATCAAAGCGATCGTCCCAACTATTACAAAACCGCGTAAAATTTCAATGTCGAGTATGTAACTATGCTAGTACGCGTCGTTTCGACCTTAAGATGCACATGTTGAATCATACCTACAAGCGATTTAAGTGCACCCTTTGTGGCTATGCCGGCACGAGACGGTCCCACCTTAGGGTGCATATGCGAATCCACACAGGGGAGAAACCGAACAAGTGCACCCTCTGTGACTATGCTAGTACGCACGCGACGAGTCTGAGATGGCACATGCTCAAACACGCGGACCAGAAGCTATTCGAGTGCTCGGTCTGTGACTATGCTACTGTAAGAAAGGGCGATCTTACGGTGCATATGCGACATCATTCCAGCGAGAAACCGTACAAGTGCCTCGTCTGCGACTATGCTACTAACAGAAAGTTCGTTCTTACGGTGCATATGCGACAGCACACAGGGGAAAAACCGCATAAGTGCAGTATCTGTGACTATGCAAGCGCGAGTCTTGCCGGACTTCGATTTCATAAGCGGACACACTTATAA
Protein Sequence: MENSTDCTFETVIVKCEPFDESFEQTETFDGQSITDTLSDIKQEVVEFEDTVDSDNAPTTNSSDLMVHTGRHTEEKPHKSDIKQELVEFGDTVVSDNAPATNSSDFTVHTLTEEKLHKCMLCDYAGAQASNLKWHMLRHTDQKLFECSICDYVTIRKGDLTVHMRHHSSEKPHKCFGCDYATTNYTSLKYHVQQKHTMERPFKCETCDYACVKRSHLEVHKRLHSTEKPYKCSTCGYATNRKFLLTVHMRQHTGEKPYKCGFCAYAITVKCEPFNECFEQTETFDGHPLTDTLIDIKQEVDEFGNTVISDNASATTSTTQEIKIEIVQIQLEHSYSAAQSEHVEDYYRTVHKTEKRHKCHICNYTTTHPTFLKAHWQTHKSKRSSQLLQNRVKFQCRVCNYASTRRFDLKMHMLNHTYKRFKCTLCGYAGTRRSHLRVHMRIHTGEKPNKCTLCDYASTHATSLRWHMLKHADQKLFECSVCDYATVRKGDLTVHMRHHSSEKPYKCLVCDYATNRKFVLTVHMRQHTGEKPHKCSICDYASASLAGLRFHKRTHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -