Agra017599.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- Zbtb8b
- Assembly
- GCA_963971325.1
- Location
- OZ020224.1:27021054-27023172[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00034 0.029 15.7 0.7 1 23 119 142 119 142 0.95 2 12 0.0038 0.32 12.3 0.4 3 21 148 166 146 169 0.89 3 12 0.064 5.5 8.5 0.5 1 20 182 201 182 203 0.89 4 12 2.4e-05 0.002 19.3 5.0 1 23 246 269 246 269 0.96 5 12 8.4e-05 0.0072 17.6 2.0 1 23 275 297 275 297 0.98 6 12 5.2e-05 0.0045 18.2 3.2 1 23 303 325 303 325 0.96 7 12 8.4e-06 0.00072 20.7 1.4 1 20 331 350 331 351 0.96 8 12 6.2e-06 0.00053 21.1 2.9 1 23 362 384 362 384 0.99 9 12 0.00036 0.031 15.6 4.3 1 23 390 412 390 412 0.97 10 12 0.005 0.43 12.0 2.4 1 23 418 441 418 441 0.97 11 12 1.8e-05 0.0016 19.6 3.3 1 23 455 477 455 477 0.98 12 12 1.3e-06 0.00011 23.3 0.4 1 23 483 506 483 506 0.98
Sequence Information
- Coding Sequence
- ATGCATTTCGAAGAGAGGTGCGATATTTGCCTAGAAGGACTTGAAAATCTAACATCCATAGATCGTCTGTGCGAAGACAACGTTAAAATCTCCAGAAAACTGCAAAATTTCATTCCAGAAATCGATTGGCACGCAAAATATTTAATATGCCGCCAGTGTTCTCAGAAAGTCGACATAGTCGATTCCTTTAGACAATTATGCCTACGATCTCTAAACAACAGAAACAAAGATGTAAAATACGAAAGTGATTTTGAAGATGTATCCGATCTCCTACCATCACCGAAAGACTTTAATACCTCCAATACGATATACAAATGCCCCATAAACCTAAACGAGTGCAAACGCGAGGAAAGTTATGTTTGTTATCACTGCAATGAAGATTTTAAAGATAAAAATGTCCTAATAAAACACATAGAACTCGTACATAACAAAGTTATAAATTGCAAGAtctgtaataatttatttaaaaatcaaaATGATCTCCAGCAACATCTAGTCGATGAACACAACATAGGGCAGGTTAAATCAAGAAAAATTAAACGATTCAAGTGTACAAAATGTTCGAGGATGTACACGACAGATAAAGTGATGAATATACATCTACTGAGCTGTGACGGTGTTCGCAGGCATTTGAAAAGTAATTTAGATGTTAAAACCGAAGACGCAACCACTAAATCTGAGGAGGATGAGGATGAAAAGGATTTGAATTTTGAGAAATTGAATGAGAAACCCTTACATAATTGTCATATCTGTGGGAACACGTTTTTTACGAAATATTTATTGAAGAGGCATATACGGAATGTTCATGCTACAGAAAAATTGTACAGCTGTGATGTTTGTGATCAGAAGTTTGCAAGTCATGTTTATTTAACTGCACACAAAAGgtACCATTCCCGGGAACGTCCCCACATTTGCTCGTTCTGCGGTAAAGGCTTCATAACGAAAAGCGACCTCTACCACCACGAGAAGATCCACGCGAACAAACGCGCCTACAAGTGCGAAAAATGCCCGAAAGCGTTCAACACCTCGTCCGACCTCCACAAACACAAAATCTGCGTACACCTCGACAAGTCCGAATGGAAATACCCCTGCCATTACTGCAATAAACGCTTCCCCTTGAAAACGAACCTAGACTCGCACATAAAAACCCATACGGGCGAGAAAAACTTCTCCTGTCATCTCTGCGATCGAAAATGCGTCAGTAAATCAGTCTTGCAAAGACACATTGATTCGCATTCGAATGTCAGATCGTTCAAGTGTAGTTTTTGCAAGATGGAGTATAAATATAGGAAATCTATGGAGGTGCACATGGCAAAATCGCATGGAGTTGGAGATGCGAAAGTTCCTGTTAGGGTGAAGAAGTATTTTTGTCATATTTGTCCGAAATCGTATTATGCGAATAATAAGCTGCAGAAGCATATTAGGACGCATACCGGTGAACGACCTTTTGAGTGTGGCGTTTGCGGGAAGAGGTTTATTGATAAGTCGTATGTTAAGCAGCATTTGAAGACGGCCCATGATATCGTTGAAGCCCCTATCTAG
- Protein Sequence
- MHFEERCDICLEGLENLTSIDRLCEDNVKISRKLQNFIPEIDWHAKYLICRQCSQKVDIVDSFRQLCLRSLNNRNKDVKYESDFEDVSDLLPSPKDFNTSNTIYKCPINLNECKREESYVCYHCNEDFKDKNVLIKHIELVHNKVINCKICNNLFKNQNDLQQHLVDEHNIGQVKSRKIKRFKCTKCSRMYTTDKVMNIHLLSCDGVRRHLKSNLDVKTEDATTKSEEDEDEKDLNFEKLNEKPLHNCHICGNTFFTKYLLKRHIRNVHATEKLYSCDVCDQKFASHVYLTAHKRYHSRERPHICSFCGKGFITKSDLYHHEKIHANKRAYKCEKCPKAFNTSSDLHKHKICVHLDKSEWKYPCHYCNKRFPLKTNLDSHIKTHTGEKNFSCHLCDRKCVSKSVLQRHIDSHSNVRSFKCSFCKMEYKYRKSMEVHMAKSHGVGDAKVPVRVKKYFCHICPKSYYANNKLQKHIRTHTGERPFECGVCGKRFIDKSYVKQHLKTAHDIVEAPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -