Basic Information

Insect: Aphodius granarius
Gene Symbol: zfh1
Assembly: GCA_963971325.1
Location: OZ020225.1:13484265-13493895[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0039 0.34 12.3 0.5 1 23 186 208 186 208 0.99

2 11 0.00041 0.035 15.4 0.9 1 23 228 250 228 250 0.98

3 11 3e-05 0.0025 19.0 1.4 1 23 257 279 257 279 0.97

4 11 0.03 2.6 9.5 1.0 1 23 285 307 285 307 0.95

5 11 0.00028 0.024 15.9 1.0 1 23 316 338 316 338 0.98

6 11 1.8e-07 1.6e-05 25.9 0.4 1 23 344 366 344 366 0.96

7 11 0.047 4.1 8.9 2.7 1 23 372 394 372 394 0.93

8 11 2.8e-05 0.0024 19.0 0.2 1 23 400 422 400 422 0.96

9 11 9e-07 7.7e-05 23.8 0.4 3 23 430 450 429 450 0.99

10 11 9.8e-05 0.0084 17.3 4.0 1 23 456 478 456 478 0.98

11 11 2.1e-07 1.8e-05 25.8 0.4 1 23 484 506 484 506 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0039	0.34	12.3	0.5	1	23	186	208	186	208	0.99
2	11	0.00041	0.035	15.4	0.9	1	23	228	250	228	250	0.98
3	11	3e-05	0.0025	19.0	1.4	1	23	257	279	257	279	0.97
4	11	0.03	2.6	9.5	1.0	1	23	285	307	285	307	0.95
5	11	0.00028	0.024	15.9	1.0	1	23	316	338	316	338	0.98
6	11	1.8e-07	1.6e-05	25.9	0.4	1	23	344	366	344	366	0.96
7	11	0.047	4.1	8.9	2.7	1	23	372	394	372	394	0.93
8	11	2.8e-05	0.0024	19.0	0.2	1	23	400	422	400	422	0.96
9	11	9e-07	7.7e-05	23.8	0.4	3	23	430	450	429	450	0.99
10	11	9.8e-05	0.0084	17.3	4.0	1	23	456	478	456	478	0.98
11	11	2.1e-07	1.8e-05	25.8	0.4	1	23	484	506	484	506	0.98

Sequence Information

Coding Sequence: ATGGAAATAACAAACTTAGAAAAAACTTGCAGGACATGCTTAACGGAATCGAAAACCTTGGAGACAGTGTTCAACACAAAGCTATGCAAGGAGGATTCCGTCATAGCGGCGGATTTCATCCGTCAACTAACAAGTTTGGAGATTAGCGAGTCTGACGATTTACCTACCAGAATATGTCTAAGTTGCATAAGTAAACTATGCCATACGTACGATTTTATACAGATGTGCCTGGCTAGCGATTCAAAACTAAGAACACTAAAACGTGTAGGTTTATCAAATAATTGTAAAATATCCGTGAAGGATGATGATGTCAAAAGTGAAATTATCGAAGATGAAGACCGGTTTATAGACTACGGGCAGGATGGCAATAACGTGGATTATGAAGATTCTGATTCCGAAGACGACAAGCCTCTTAAAAAAAGAAAGCAACAAAAAGAAGATGACGATTGGGACGAAAAGAAACATTGCGACGATTCAGATTCAGAAGACGAAAAGCCTCTGAAAAAACGAAAGAAACGGAAAAAGAGAGATGAAAATTGGGATGAACAGAGAAATTACAAGTGTGCGAAATGTCCACGATGGTTCAAAGCTAAAAGTGTTTTGATATTACATCAGAAAACACATAATAAGAAGGAAAAACTTAGTAAAATAGATAGAGCTGCTTGGCGAGCAATGAAAAAGTACAAGTGTGACCAGTGTGAGAAACTATTTATGACACCAAAAACCCTAGAGAATCATGAGAAACTGCATGACCAGAAAAAGGAGGATTATGTCTGCCAAACTTGTgggaaaattttcaaatatttatatcTCCTCGAAAGGCATAATTACACACATCAAGAACAGAAGCCATTCCTGTGTTCTATCTGTAGTAAAGGTTGCCTAACTGCAGAGAGTTTAAAACGGCATGAAATGATCCATGACCCGAGCTACATTAAGGAAACATATTCGTGTGCTGAGTGCTCGAGGGTATTCCAAAATCGCAGTGGTTTAGTGGAACATCTGAAGCATCACACAGGAGAGAAACCGTTCCTCTGTCCAATATGTGGGAAGGGATTCCGGCAGAATGGTACCTTAAAATCTCATCTAAGGTCACATGATGGCATTAAGCCCTATGCCTGTGATCAGTGTGACAAACGCTTTCCTTCGGAATATGCCATGAAATGTCACTCAAAAAGACACACAGATGAAAGGCCATATATTTGTGATATCTGCAGTAAGGCATTCAAGCAGCCCTCAGATCTGTACGGGCATAAGAAGGGGCACACAGGAGAACGAAGGGCATTATGCTCGATTTGTGGGAAGTACTTTGCCAGCGAAAGTCTGTTAAGGCGGCACATCCGATCTCACACAGGTGAAAAACCGTTCTCCTGTAAAGTATGTGGGAAATCGTTTACGACAAACTGCCTACGTCGTAACCATGAACGGATCCACACCGGGGAAAAACCGTTTGTTTGTAAGTTGTGCGGTAAAGCTTTTAACCAGAGTGGCACTTTGGCGACACACATGAAGATGCACAGACGGAAAAACGATATTGCCCAAGTACAACGAGAGGCCCCGCACAATGATGTACAAAGCGAGGTTATAATCAGGAGTGCTAACGAAAGTATTATAGATCATTCGATTTTAAATGTACCCGTTTGTACAAATTTAAGTGCAATGTAG
Protein Sequence: MEITNLEKTCRTCLTESKTLETVFNTKLCKEDSVIAADFIRQLTSLEISESDDLPTRICLSCISKLCHTYDFIQMCLASDSKLRTLKRVGLSNNCKISVKDDDVKSEIIEDEDRFIDYGQDGNNVDYEDSDSEDDKPLKKRKQQKEDDDWDEKKHCDDSDSEDEKPLKKRKKRKKRDENWDEQRNYKCAKCPRWFKAKSVLILHQKTHNKKEKLSKIDRAAWRAMKKYKCDQCEKLFMTPKTLENHEKLHDQKKEDYVCQTCGKIFKYLYLLERHNYTHQEQKPFLCSICSKGCLTAESLKRHEMIHDPSYIKETYSCAECSRVFQNRSGLVEHLKHHTGEKPFLCPICGKGFRQNGTLKSHLRSHDGIKPYACDQCDKRFPSEYAMKCHSKRHTDERPYICDICSKAFKQPSDLYGHKKGHTGERRALCSICGKYFASESLLRRHIRSHTGEKPFSCKVCGKSFTTNCLRRNHERIHTGEKPFVCKLCGKAFNQSGTLATHMKMHRRKNDIAQVQREAPHNDVQSEVIIRSANESIIDHSILNVPVCTNLSAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -