Agra023649.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- -
- Assembly
- GCA_963971325.1
- Location
- OZ020227.1:1535099-1536706[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4e-06 0.00034 21.7 0.8 1 23 90 112 90 112 0.98 2 12 0.00033 0.029 15.7 2.9 2 23 117 139 116 139 0.93 3 12 0.00093 0.079 14.3 4.0 1 23 196 218 196 218 0.99 4 12 0.1 8.6 7.9 0.4 1 19 222 240 222 245 0.91 5 12 0.00014 0.012 16.9 2.7 1 23 300 322 300 322 0.97 6 12 0.092 7.9 8.0 0.1 2 20 329 347 328 349 0.93 7 12 3.8e-05 0.0033 18.6 0.9 1 23 364 386 364 386 0.98 8 12 7e-06 0.0006 20.9 1.7 1 23 392 415 392 415 0.98 9 12 1.5e-05 0.0013 19.9 0.4 1 23 421 444 421 444 0.95 10 12 5.2e-06 0.00045 21.3 1.5 1 23 453 475 453 475 0.98 11 12 6.3e-06 0.00054 21.1 0.3 1 23 481 503 481 503 0.97 12 12 3e-05 0.0025 19.0 5.6 1 23 509 531 509 531 0.98
Sequence Information
- Coding Sequence
- ATGATAAATTTGTACGCGGCCAACCACGGAGGGAGAAATTTTTTATTGAACGATGTACTTCAAAATCAATCACAGGTGGACCAAGAAATAAAACTGGAATGTGATGACGATAGCCTTGGATGCGATGTAGATTTATCAGGACATGATGTACAAGATCAACCTGAGATTGAGATAAAAGTTGGCGAAAAAGAAATAACCCTTGCAATGGATCAGCAAATTGAATCGAGCAAATCTCATATATACAATGACACCGATGGTAAGAGACCGTTCCGATGTGAAGATTGTGGTACTTCATTCACCAAAAAAACAGTACTGATCGATCACATTAAGAGGCACTACGACGACTGCAGATGTTTAATCTGTAATAAATCATTCAAAGATCGATACGGGATAAAGCGCCATCTATCAAACGTACATAAAATCAATATGAACAAGGAGAACAAGGGGCAAGTTTACACCGTAACCACAGATAAAGATAGCTTGGATAAAAGCCTAAAGAAACATTTGGAACTATACAAAAACGTGGTTGTTACAGAAGGAGAGAATTACCAGTTGAATGATGATGAAGAAGTTCAAAGCAAACCTTTCAAATGTAACATATGCGAGAAAGagtatcataaaaaaaaatatttcctcGATCATATCAGAATTCACTTCACCAAATACGATTGTAAACTTTGCAGTAAACAGTTTGATAACATTGCTGTGTTAAAAAACCATTTTCCAACTGTCCACCAAATTGATACAAGCGATGATATTAGTTGGCGTGGTAACATTAGCACCATAATTGATGAAACAAATATGGAGGAAGCCTTAAAAATGTACGATGAGGAAAATAAACTTGATTCTTGTGAGGATCAACAAGAGGCAGTAAGTGAAGCATCAACTGCTTCCGTGTATATTTGCGAGAGCTGCGGTAAACAATTTAAGGACAAGACTGCGTTTTGCAGGCATAAAATAATCCACAACGATAAAATATCATCGGTATGTGATAGCTGTCAGAGAGGCTTCCAAACCAAAGCAAAATTTGAAGAGCACATATCCGAATGCCGACTCAGCATACACCGTAAATGCAAATTAGATGACAATTTTACCTGTGATGCTTGCGGATATAccacaattagaaaatatgccCTATTTAATCATATACGAAAGCATAATGACGAAAGGCCGTTTAAGTGCAATATGTGCGATAAAGCATTTAGTCTAAGTAACTCTTTAAGCAAGCATAAGAAAACGGCACACGCAAAGGTTCGATTATTCACCTGCGAATATTGTAGTAAATCGTTCAACATTAATGGATCTTTGAATAAGCACATTCTAGAAGTGCACTTGTCTGATAAAATAGACAAGAAATTTGTCTGTAGTTTTTGTGGGAAAAAATATCGATTACAAAGCCAGTTGAACAGCCATCTAAGGTGGCATACCATGGATAAAAGGTACAATTGCGATATATGCGGGAAAGCATTTGTCGATAACACCTCGGTAAAGAAACATCGGGTCACCCATTTTGCCGAGAAGAAACACAAGTGTGAAATTTGCGGGAAAGGATTCCATCAAAAACATAATATTAAGATTCACATGAAGGTGCATTTGAGAGTTTCATAA
- Protein Sequence
- MINLYAANHGGRNFLLNDVLQNQSQVDQEIKLECDDDSLGCDVDLSGHDVQDQPEIEIKVGEKEITLAMDQQIESSKSHIYNDTDGKRPFRCEDCGTSFTKKTVLIDHIKRHYDDCRCLICNKSFKDRYGIKRHLSNVHKINMNKENKGQVYTVTTDKDSLDKSLKKHLELYKNVVVTEGENYQLNDDEEVQSKPFKCNICEKEYHKKKYFLDHIRIHFTKYDCKLCSKQFDNIAVLKNHFPTVHQIDTSDDISWRGNISTIIDETNMEEALKMYDEENKLDSCEDQQEAVSEASTASVYICESCGKQFKDKTAFCRHKIIHNDKISSVCDSCQRGFQTKAKFEEHISECRLSIHRKCKLDDNFTCDACGYTTIRKYALFNHIRKHNDERPFKCNMCDKAFSLSNSLSKHKKTAHAKVRLFTCEYCSKSFNINGSLNKHILEVHLSDKIDKKFVCSFCGKKYRLQSQLNSHLRWHTMDKRYNCDICGKAFVDNTSVKKHRVTHFAEKKHKCEICGKGFHQKHNIKIHMKVHLRVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00137251;
- 90% Identity
- iTF_00137251;
- 80% Identity
- -