Agra006469.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius granarius
Gene Symbol
-
Assembly
GCA_963971325.1
Location
OZ020222.1:2312293-2314019[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.0015 0.13 13.6 0.3 2 21 33 52 32 53 0.94
2 14 0.0032 0.28 12.6 3.6 1 23 129 152 129 152 0.98
3 14 0.13 11 7.5 4.1 1 23 157 179 157 179 0.98
4 14 0.00013 0.011 16.9 4.7 1 23 184 206 184 206 0.99
5 14 0.00068 0.058 14.7 5.7 1 23 212 234 212 234 0.99
6 14 3.5e-05 0.003 18.7 0.9 1 23 240 262 240 262 0.99
7 14 0.015 1.3 10.4 1.7 1 23 268 291 268 291 0.96
8 14 0.028 2.4 9.6 1.2 1 23 297 320 297 320 0.90
9 14 3.7e-05 0.0032 18.7 2.9 1 23 323 345 323 345 0.99
10 14 8.9e-05 0.0076 17.5 3.5 1 23 352 374 352 374 0.99
11 14 9.6e-05 0.0083 17.4 3.6 1 23 380 402 380 402 0.99
12 14 2.3e-06 0.0002 22.5 3.0 1 23 408 430 408 430 0.99
13 14 0.00014 0.012 16.8 1.6 1 23 436 458 436 459 0.96
14 14 4.3e-07 3.7e-05 24.8 0.5 1 23 465 487 465 487 0.99

Sequence Information

Coding Sequence
ATGTCAACATTTGAAGAGATACGAACATTTGGACAGCATCCGACCGTGAAACATGACAAAACATATGCAAATGAATATAAACCTGCTAAGAATTTGATGTGTAAATTGTGCGGTTTCAAGTTTAGTGAAGAGAGGTATTTACAGAACCACATTAAGCTTTGCCTGGACGTTGAAACCCCTGCGAAAAGACTGGGTTTGAAAATAGAAAAGATCGAGAATGTTTGCAAAGAAGAGTTTCCGCTCTCGAAAGGGTTTGAAGACTTAACAACCAAAACAGTATTGGACATAAAATCTGAATTGGAAATTACTGAAACTGCTATTTCCGAATTATCAAATAACATTAAAGATGAAGAGAATCAAGCACAGCTATCGCGGAAACTTTTATACGAGTGCAACATGTGTGAGTATACGACGAAGAAATTCAGCTTTCTAAAAGCCCACAAACGAAGACGACACACGCAGAAGAAATTCAAATGTTCCATCTGCACCTACACTACTTTACTTCGCGTCAAGCTTAAACATCACATCAGAAGACACGGAGAGCGACCATACAAGTGCACCAGATGCGAGAACACCTATAAAAGGCGTGACCATCTCGAACAACACGTTAAAACACACACCGGTCAAAAACCTTACAAGTGCAAGACATGTGACTATGCTTGCGCGCACAAATTTTCCCTCAAAGTCCACGAGAGGTCGCACACAGGACTCAGACCTTTCAAATGCGCGATTTGCGGCTCCGATTTCGCTAGTAGAAGTTGCCTTATTTCGCACGTAAGGACCCACACTGGTGAACGACCACATAAATGTACGGAATGTAACTATGCTTCTACACAAGGTCAGGCGCTTAAAAATCATTTCATGAGAGTCCATACCGATCAGAAACCGTTTAAATGTGAGGCATGTAACTACGCTACTACAGATCGTACCTCTTTGTCGAAACATAACGTAAGGAAGCACAAATTGTATAAATGCTCAGTGTGTGACTATGCTTGTGCGGGGAGGTCGAGTTTTAAGACCCACATGAAGACGCATGTTAAACGGGAACGGCCGTTCAAGTGCCACATATGTGGTTATGCTTGCGTGTACAAGTTCACACTGGAAATACATGTTAGGAGTCACACGAGAGTCAAGCCGTTTAAATGTCCCTTGTGCGATAATTCCTACAAAGCTAAACATTCTCTGCTCAAGCATTATCGGACGCATTTCGATAAAAAAGAGTTTAAATGTGCGATGTGCGATAAAATCTACAAAAAGAAAGATCACCTCGTTCGCCACGTCAGAACACACACCGGCCAAGATCTATATAAATGCGAATCTTGTGACTACGCTTCTGCATACCAGTCTTCCTTAATTTATCACATCAGAAGACACCACACAGGCGAAAGACCGTATAAATGCCCGGATTGTGACTATGCTAGTACGAGTAGTTCGTATTTAAAAGTGCACGTGAGGACCCACACCGGAGAAATGCCGTTTAAATGA
Protein Sequence
MSTFEEIRTFGQHPTVKHDKTYANEYKPAKNLMCKLCGFKFSEERYLQNHIKLCLDVETPAKRLGLKIEKIENVCKEEFPLSKGFEDLTTKTVLDIKSELEITETAISELSNNIKDEENQAQLSRKLLYECNMCEYTTKKFSFLKAHKRRRHTQKKFKCSICTYTTLLRVKLKHHIRRHGERPYKCTRCENTYKRRDHLEQHVKTHTGQKPYKCKTCDYACAHKFSLKVHERSHTGLRPFKCAICGSDFASRSCLISHVRTHTGERPHKCTECNYASTQGQALKNHFMRVHTDQKPFKCEACNYATTDRTSLSKHNVRKHKLYKCSVCDYACAGRSSFKTHMKTHVKRERPFKCHICGYACVYKFTLEIHVRSHTRVKPFKCPLCDNSYKAKHSLLKHYRTHFDKKEFKCAMCDKIYKKKDHLVRHVRTHTGQDLYKCESCDYASAYQSSLIYHIRRHHTGERPYKCPDCDYASTSSSYLKVHVRTHTGEMPFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-