Basic Information

Insect: Aphodius granarius
Gene Symbol: SCRT1
Assembly: GCA_963971325.1
Location: OZ020221.1:44645922-44650359[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00086 0.073 14.4 0.1 1 23 312 334 312 334 0.95

2 12 4.4e-05 0.0038 18.4 1.6 1 23 342 364 342 364 0.99

3 12 2.7e-05 0.0024 19.1 0.4 2 23 372 393 371 393 0.97

4 12 5.6e-06 0.00048 21.2 1.1 1 23 399 421 399 421 0.98

5 12 4e-05 0.0034 18.6 2.7 1 23 428 450 428 450 0.99

6 12 0.0013 0.11 13.8 1.2 1 23 456 478 456 478 0.95

7 12 1.1e-05 0.0009 20.4 0.1 1 23 484 506 484 506 0.98

8 12 1.1e-06 9.5e-05 23.5 1.2 1 23 512 535 512 535 0.96

9 12 1.3e-05 0.0012 20.1 2.0 1 23 541 564 541 564 0.96

10 12 2.7e-05 0.0023 19.1 2.1 1 23 570 592 570 592 0.99

11 12 9.2e-05 0.0079 17.4 1.5 1 23 598 620 598 620 0.97

12 12 0.0011 0.095 14.0 0.1 1 23 626 650 626 650 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00086	0.073	14.4	0.1	1	23	312	334	312	334	0.95
2	12	4.4e-05	0.0038	18.4	1.6	1	23	342	364	342	364	0.99
3	12	2.7e-05	0.0024	19.1	0.4	2	23	372	393	371	393	0.97
4	12	5.6e-06	0.00048	21.2	1.1	1	23	399	421	399	421	0.98
5	12	4e-05	0.0034	18.6	2.7	1	23	428	450	428	450	0.99
6	12	0.0013	0.11	13.8	1.2	1	23	456	478	456	478	0.95
7	12	1.1e-05	0.0009	20.4	0.1	1	23	484	506	484	506	0.98
8	12	1.1e-06	9.5e-05	23.5	1.2	1	23	512	535	512	535	0.96
9	12	1.3e-05	0.0012	20.1	2.0	1	23	541	564	541	564	0.96
10	12	2.7e-05	0.0023	19.1	2.1	1	23	570	592	570	592	0.99
11	12	9.2e-05	0.0079	17.4	1.5	1	23	598	620	598	620	0.97
12	12	0.0011	0.095	14.0	0.1	1	23	626	650	626	650	0.94

Sequence Information

Coding Sequence: ATGTCTTCGAAGGAAGCTAAGGAAAACCCACACTGCTTGGTATGCAGTTCAAGAGTCGGCGTTTCAACCAGGAACGCTGTGCAAATCTTCCAAAACGAGGCCCAAACATGTTCCGAAAGGCCGCTACGCTTCATAATGACGCAAGTCCTAGGCGTGGACGTACAAGAAGACAACGTACACTCACTGTTAATCTGCAAGAAGTGCTTCAAACTATTCGACGAAATAGACGGTTTAGAACAGCGTCTTTTGGAAATCAAAATCGAATTAGTCGATAATTATAAGAAATCCGTGCACAAACACAAAAACGGCGAACACATCGACGAGACGGAACCACAAAATATACACGTCAAACACAGCGATACAGAAAATGAAGTTCCAAAGAAAATTTTAGATATACCTTCTTCCGATGATGAGTCACAgCAGACTTCGCCGGAGAAATCCACAAACTTGGAAACCATCGAAGATATAGAGATGGCGTTAGTAAAAATGCACGGAGATGATCCTTCGAAAGGGGCCGCGGTCGAGGTCGTGGAAGAGACGGCCGCTCAACCTTTCCACGGGTTCGAACACGGAATGGTCGATAACGATATGGAGAATCAGTCCGACTCGGATTTCGATCAACACAGCGAGCACACCGAGACGTTACTGCAAGCCGCCGAGATGGCCGAAAATAGTTTACATAAAATTCGTATAAAGGTCGAGGATGGTATGGAAAACGACGGGGATAAACCGAACATATTGAAGCGGAAGGGCCCCCCGACAAATTTAGGGAAGAAGAACGTCGCTAAGAAGATTAAAGAGGAAGTTTTACCTCCGATTGTTGCTAGAGAGGGAAATATGTATACGTGTCTTTTGTGCGATGGGGATGAGACGGTCTGCGGCGAGGCAAAGGCGATTATGCAGCACGTTAAAACGTTGCACGACGCTCGATTATACATCTGCGACGTGTGCGGAGAGGATTTTAGAAAACGTAATGAACTCTCGTTACATTTGGACGAGCATGTTGCCACCGAAGAGGGAGATTTTCAGTGCGAGGTGTGCAACAGGATATTTAGTAATCTGCGCCTGTTTAGGATACACAAACGGATGCACTATCCGCAGAACAAGGCGTGGACGTGCGAGACATGCGGAAAAAGATACAGCTCGAAAAATCTTCTCGACGAGCACATAAACACGCACACCGGCGTCCGTCCCTACGTCTGCCAGATGTGCGGCAAGGACTTCGCCTCCAAGTACACGTTCAAGGCGCACGAGAAAACGCACGAGGTGCGCCCCCGTCCCTTCCAGTGTTCGCAGTGCAACAAATCGTTTCTGAGCCAGCAGAATTTGACGCAGCACGAGCGGACGCATTCCGGCGTCAAAGAGTTTGCTTGTCACCTCTGCGACAAGCAGTTTGGGTCGGTGCACAACCTCGAGGTGCACTCTATCGTCCACACGGGGTACAAGCCGTACAATTGCGGGGAATGCGGGAAGGCGTTTGCGAGGAAGGCGGAGATCAGGGACCACGAGAGGACGCATACTGGCGAACGGCCGTACCAGTGCGAATTTTGCGGGGCCACGTTCAGCCAGAGGTCGAACCTGCAGTCGCACAAGAGGGCCACGCATTACGACGATAAGCGGTACAAGTGCGATCATTGCGGGAAAGGGTTTAAAAGGAGAAGATTACTCGACTACCACATAAAGGCCGTACACACGGGCGAACGCCCCTTCAAGTGTGACGTCTGCGAGGCCACCTTCGTCTACCCCGAGCACTTCAAGAAGCACCGACGCATCCACACCGGCGAGAAACCATACCACTGCGAGGTCTGCGGCAAGGCGTTCAACAGCCGCGACAACAGGAACGCTCACAGGTTTGTCCACTCCGACAAGAAGCCCTACGAATGTCTCGTCTGCGGCGCAGGCTTCATGCGCAAACCCCTCCTCTACCAGCACATGCAGACCCAGGGCCACCTCAACGACACCATCGTCGTCAATCAACCACGCCTGACGACAGACGATGATCAAATTATCACGGTGAATGCGGATGGGGAGATGGAAATTTTGGAGGGGGACGTCAGTCGGTTGGAGCAAATCGACGGTAATGACGAAGACTCGAAGTTATACATCGCCGATTTAAAGCCGCATATGTTGGTCGACGGGAAAGTGTTTGAGAACTCTGACGGGTCGTTAATCGTGAGGGAGCAGCTCGACGAGGACCAGATGGAAGATTCGGAAGCCGTCGAACATATTATCATCGACGGAcagCAAATACAGTTTGCGGAGGACGACGGGGAGGCAGAAGAAGCTGAAGAAGGTGAGGACGAGAGTCACGTCTTGACGACGGTAGACGAGTACGAAAGGATAATAGCGAGCGCGGCGCTTTCGAACGGCGAGACGCAGATAATTCATACGAAGGAAGGGCCCGTGCAGTTTGTGCAGGTGCGGATCCCTAACGATAATGGGGAGGAGGAAGACGCATGGTTGAAGATTGTACCTTAa
Protein Sequence: MSSKEAKENPHCLVCSSRVGVSTRNAVQIFQNEAQTCSERPLRFIMTQVLGVDVQEDNVHSLLICKKCFKLFDEIDGLEQRLLEIKIELVDNYKKSVHKHKNGEHIDETEPQNIHVKHSDTENEVPKKILDIPSSDDESQQTSPEKSTNLETIEDIEMALVKMHGDDPSKGAAVEVVEETAAQPFHGFEHGMVDNDMENQSDSDFDQHSEHTETLLQAAEMAENSLHKIRIKVEDGMENDGDKPNILKRKGPPTNLGKKNVAKKIKEEVLPPIVAREGNMYTCLLCDGDETVCGEAKAIMQHVKTLHDARLYICDVCGEDFRKRNELSLHLDEHVATEEGDFQCEVCNRIFSNLRLFRIHKRMHYPQNKAWTCETCGKRYSSKNLLDEHINTHTGVRPYVCQMCGKDFASKYTFKAHEKTHEVRPRPFQCSQCNKSFLSQQNLTQHERTHSGVKEFACHLCDKQFGSVHNLEVHSIVHTGYKPYNCGECGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCDHCGKGFKRRRLLDYHIKAVHTGERPFKCDVCEATFVYPEHFKKHRRIHTGEKPYHCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQTQGHLNDTIVVNQPRLTTDDDQIITVNADGEMEILEGDVSRLEQIDGNDEDSKLYIADLKPHMLVDGKVFENSDGSLIVREQLDEDQMEDSEAVEHIIIDGQQIQFAEDDGEAEEAEEGEDESHVLTTVDEYERIIASAALSNGETQIIHTKEGPVQFVQVRIPNDNGEEEDAWLKIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00981452; iTF_00138341;
90% Identity: iTF_00981452; iTF_00138341;
80% Identity: -