Agra023653.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius granarius
Gene Symbol
RGM1
Assembly
GCA_963971325.1
Location
OZ020227.1:1550051-1552445[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.5e-06 0.00022 22.3 0.8 1 23 147 169 147 169 0.98
2 16 0.0009 0.077 14.3 3.5 5 23 177 196 174 196 0.92
3 16 0.00079 0.067 14.5 1.0 1 23 244 266 244 266 0.99
4 16 0.0004 0.034 15.4 0.7 1 23 270 293 270 293 0.91
5 16 0.0003 0.025 15.8 0.3 2 23 351 372 350 372 0.98
6 16 0.11 9.1 7.8 3.1 3 23 378 399 377 399 0.97
7 16 4.3e-05 0.0037 18.5 4.2 1 23 447 469 447 469 0.99
8 16 0.024 2.1 9.8 0.1 3 22 475 494 474 496 0.89
9 16 0.0016 0.14 13.5 0.4 1 23 537 559 537 559 0.98
10 16 0.07 6 8.3 3.8 3 23 567 588 565 588 0.95
11 16 0.0067 0.58 11.6 0.5 1 23 602 624 602 624 0.98
12 16 2.2e-05 0.0019 19.4 1.7 1 23 630 653 630 653 0.97
13 16 1.8e-05 0.0015 19.7 3.2 1 23 659 682 659 682 0.96
14 16 0.0027 0.23 12.8 2.2 1 23 691 713 691 713 0.94
15 16 1.6e-05 0.0014 19.8 1.4 1 23 719 741 719 741 0.97
16 16 3.2e-05 0.0028 18.9 3.5 1 23 747 769 747 769 0.98

Sequence Information

Coding Sequence
ATGTCTTCTAACATATGCCGGTTGTGTTTAAGTTTTACTGCAAGTTGCTACAAGGCTTTAGCAAgtatagaagaaaagtatttctTATTGATATTACCAGAAATTGATATTAATTTGGTAGAGTCACCCATGATCTGTGGGAGTTGTATTGCATTATTACAGACAACATACACATTTAGGAAAAACTGTATTCAAACAGAAAAAATCTTGAAGGAATACGCCTCAAACAGCGGAGAGAACAATTTATTGCTAAGCAATGTACTTCAAAACCATCCTGAGGTTCTATTCAACAAAGATGTTAAAGTAGAATCTGATAATAATAACTTGGGATGCGATTTAGATTTAGTAGTAGGGGATACCCGGGATTTGCAATGTCCTGAAATTGATATAAAGCTTTGTGAAGAAGAAATAATGCAGGAGAATCAGGCGGACACATCTTTTATTTGTAGAAACTGTGGTAAGTCTTTTTCCGATAGAAAATTGTTAATTGAACACGTGAAGACACACTACGAACAACCTCACTGTATCACCTGCGATAAGACATTCTCAAACCGTTATGGGTTGAAACGACATCTGTCAAAGacacacaaaaaccagatgagtGATGAGAATGACGAGAAACTATACACAATGTACCCagataaagaaaaattaaatgattatttaaaattatacgACAATTGTAAAAATACACCTGATTCTCATACAGAAGAACAATTTGCTAGTTTATACAAATGCAAATTATGTCAGAAAACTTATCCCATAGAAAAATTACTCATAGATCATACGAAAACACATTTCACTAGATACAACTGCAAACACTGCGGGAAGGTGTATTATAACGTCGGTGTGTTAAAGCGCCATCTAGTGGAGATCCACAAAATTGAGATAGGCGACGAAGTCGCTTTGCGCGATCAGATTATCGTATTAATTGACGAATCCCTAGTGGAAAACGCTTTAAAAACTTACGGCAACCTTACTTTATACAACGAACTAGAAGAAACACCTAAAGACGGCAAATCCCTTAAACAACCTTTCGAAAAACAACAACAATGCAACATTTGCGAAAAAGGTGCCTATGATAAGAAAGGCCTACGGGCTCACATCCGTCGACACTTTACCAAAGCCGATTGTAATCTTTGCGGGAAACGATACTTGCACATACCGACGTTAAAACATCACTTACGCAGCTTGCACAAAAAGGCTACTAATTGGCGGGAGGAGACTACGTTAATAATCGATAATTCAGCGTTAATGAAAGCTTTGGTCGAACATAACGTTAGCACGGATAAAGACGAAGTTGTATTAGAACAAACATGGAATAAAAACGAAGAATTGTTCAAATGCAATCTATGCCGGAAAGCGTATCGTGCGAAATCGACCCTCCAGCATCATATCCGACGACATTTTACCAACCCAAATTGTAAACTCTGCGGGAAAGTATACTTTGATATAGCCTCTGTCAAACGACACTTAGTGGGTATGCATCAAATTGACGTTAGCGACGATATTACATGGCGATCAAACATGACCGTTAAAATACTTGAATCAGAGATGAGAGAAGAATTGAAACGAGTCAGTGATGTACCTGATTCTGAATCACCAAAATATACCTGTAAAACTTGCGGTAAAGAACTAGGGAATAAATGGTCGCTCGGAAAACATAAATTGATACACGTCGGTAAAAAAACTTCGATATGCGAACACTGCAACAAAGGATTTTTAACTAAAGAGCGACTTAGAAGCCATATTCACTCGTATCATCTGGGTATGCGTTCAAAATGTATAAACACCGAACGAAATTTCGTTTGCGATATCTGCGGATTTCGTGCTAAGCTACGAGAGACGCTGGTTCGTCATAATCGTCGTCATACTGGAGAACGACCGTATGAATGCGATATATGCCATAAATCGTTTAGATATAAAGGTTCGTTGGATACGCACAAGGCGACTGTACACTCCACAGAGCGTTTGTTTACGTGCGAATATTGTAGCAAGTCGTTTAATTTTAACGGTTCGCTGACCAAGCACATTCAACACGTGCACATGGGTGATAAAATTGAGAAGAATTTCGTTTGTTGTTACTGCGGGAAAAAGTATCAGTTGCGATCCCAACTGAATTCCCACGTAGTGTGGCATAAGTCTGATAGGCCCTTCAGCTGTGATTTATGCGAAAAGAGATTTGTGAATAAACAGTCGTTAAGGAAACATAGGATAATACATTTTCCGGAGAAGAAACACACGTGTGAGATCTGTGGTAAAGGTTTtcattataaatataatattaaagtgCATATGAAGGTCCACGGTATAGTATCTTAA
Protein Sequence
MSSNICRLCLSFTASCYKALASIEEKYFLLILPEIDINLVESPMICGSCIALLQTTYTFRKNCIQTEKILKEYASNSGENNLLLSNVLQNHPEVLFNKDVKVESDNNNLGCDLDLVVGDTRDLQCPEIDIKLCEEEIMQENQADTSFICRNCGKSFSDRKLLIEHVKTHYEQPHCITCDKTFSNRYGLKRHLSKTHKNQMSDENDEKLYTMYPDKEKLNDYLKLYDNCKNTPDSHTEEQFASLYKCKLCQKTYPIEKLLIDHTKTHFTRYNCKHCGKVYYNVGVLKRHLVEIHKIEIGDEVALRDQIIVLIDESLVENALKTYGNLTLYNELEETPKDGKSLKQPFEKQQQCNICEKGAYDKKGLRAHIRRHFTKADCNLCGKRYLHIPTLKHHLRSLHKKATNWREETTLIIDNSALMKALVEHNVSTDKDEVVLEQTWNKNEELFKCNLCRKAYRAKSTLQHHIRRHFTNPNCKLCGKVYFDIASVKRHLVGMHQIDVSDDITWRSNMTVKILESEMREELKRVSDVPDSESPKYTCKTCGKELGNKWSLGKHKLIHVGKKTSICEHCNKGFLTKERLRSHIHSYHLGMRSKCINTERNFVCDICGFRAKLRETLVRHNRRHTGERPYECDICHKSFRYKGSLDTHKATVHSTERLFTCEYCSKSFNFNGSLTKHIQHVHMGDKIEKNFVCCYCGKKYQLRSQLNSHVVWHKSDRPFSCDLCEKRFVNKQSLRKHRIIHFPEKKHTCEICGKGFHYKYNIKVHMKVHGIVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
-
80% Identity
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