Agra023660.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- Zfa
- Assembly
- GCA_963971325.1
- Location
- OZ020227.1:1577962-1582191[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 7.4e-05 0.0064 17.7 2.9 1 23 167 189 167 189 0.99 2 17 6.6e-05 0.0057 17.9 2.5 1 23 347 369 347 369 0.99 3 17 0.021 1.8 10.0 0.4 1 15 375 389 375 394 0.85 4 17 0.0014 0.12 13.7 0.7 1 23 399 422 399 422 0.96 5 17 0.008 0.68 11.3 1.5 1 23 453 476 453 476 0.96 6 17 0.044 3.8 9.0 0.6 1 19 482 500 482 503 0.95 7 17 0.0016 0.14 13.5 1.6 1 23 509 532 509 532 0.94 8 17 0.00088 0.076 14.3 0.6 2 23 541 563 540 563 0.96 9 17 1.2e-06 0.00011 23.3 0.8 1 23 573 595 573 595 0.98 10 17 0.00089 0.076 14.3 2.0 1 23 601 624 601 624 0.95 11 17 0.00045 0.038 15.3 0.3 1 23 633 656 633 656 0.97 12 17 0.00046 0.039 15.2 8.1 2 23 662 683 659 683 0.94 13 17 2.2e-05 0.0019 19.4 1.4 1 23 689 712 689 712 0.97 14 17 0.00012 0.01 17.0 1.1 1 23 718 741 718 741 0.94 15 17 0.022 1.9 10.0 0.6 1 23 750 772 750 772 0.95 16 17 1.2e-05 0.0011 20.2 0.2 2 23 779 800 778 800 0.97 17 17 6.2e-05 0.0053 18.0 4.0 1 23 806 828 806 828 0.96
Sequence Information
- Coding Sequence
- ATGCTTGTTTGTCGTTTGTGTTTAAAACTTTCACCAGAGGAATCTAGCAAGGATATATCAACGCTTGACGGTGAACAATTTAAGCTAATACTGCCCGAAATTAAttttcactcaacaaaatcACCTATGATATGTGATCTTTGCTTAAGATCATTGGATGCAGCTTATACTTTCAAAACTTCGTGCATGCAAACCGAAACGCTCATTAACAGCTACAAAGAAATACACGGCAACGTAAATTTGATCGAAATTTACGAAAGTAACACCGTTTTGGACAGTTTTGACGAAGAATGTGGTCTACTGATTGGAGAATCACTTGTGAAAATTGCTGATGacaattttgatgattccaaTGTTCGGAACGATCATGCTTATAGCAGTTTCCATGTTTCGGCCGGAGAAGAGGGTAGAGAAGATTTAGAAGATATAAATCTAGGTATTAAAGAAAAGGACTTAAATATTCCATCTTCTGGAAGCCAACAGTCATCAGACAAAAATTACAAATGTCAGCAATGCTCAGCAACTTTTAAAAAGGCATTCACTTTGAAACAACATATGTCCACTCATTTCACAGAGGAATCTAGGAAGGATATCTCAACGGTTGATGGTGACCAATTCAAGCTAATACTGCCCGAACTGGATCTTAGCTCGATACAATCACCCGTAATATGTGACCTTTGCCTAAGATTATTGGATGAGGCTTACACTTTCAAAACTTGCTGCCTGCAATCTGAAGCACTCATCAACAGCTACAAAGAAATACACGGCAATGTAAATTTGATTGAAATTTACGAAAGTAAAACCAATTTAAGAGACAGTTTTGATGAAGAATGGGGAAGTTCACTGATTGAAGAATCGTCTGTGAAAGCAGAAATTGCTGACGATTCAAATATTCATACAGATTATGCTTATAGCAGTTTTCATGTTTCGACTGGAGAAAAGGATAGCCGAGAAGATGTAGGAGATATAAATCTAAGGATTAAGCAAGAGGACTTAAATGGTAAAACTTCTGGAAGCCAACAGTTAtcagaaaaaaattacaaatgccAGCAATGCTCAGCAAATTTTAAAAACACGGGTAGTTTGAAACGACATCAGTCCACACATTTCACAGATAGGTCCTTCAATTGCCCCATTTGCAATAAAATGTTTACCATGAAAAGGCACCGGCAAGAAGTTCACGGCGCAAAAACATTTAATTGCAATCAATGCCCCTTACGGTTTTCAGCCCAAAGATATTTAGAACAACACATCGACAGAAGACATGAAACATCAACAAATTCCGATGAAATTACAACAAAAAAGGAACATAAAAGACACATCAATCATGAACACAAgataaaaaaagaattaaaatttAAGTGTCCACATTGTGAAGATGTCTCAAAAACTTTCGAAAATCTCCAAAATCATGTAAAAGAACAACACAATAATACAGCATTGTATTTCTGTAAACTTTGTGCTAGACAATTCGAAACTTCTTACAAACTTAAAGAACACTCGGATATATGCCCGGAAAAGCAATTTGTATGCCAGATCTGTCTAAAAAGGTACGAACACAACAGCAAACTTATCACTCACATAACTCTAACACATACCTCCAAAAACCATCACGAACTCATCTGTCAAACATGCGGTTTGTTATACAAGAACAAAATGtcattaaaaatacatattaagACACAACATTTAGGGATTCGACGAAAACGTACCAAATATACTTGCGAAGTTTGTAATAAAAGTTTTAGTAAACCCACGGCTCTCAGAAGACACAAATTGATACACGAAATCCATACGGATTTCCTGTGTCCCGTGTGTCAGCAGGGATTTAAATCTAAATATTATATGCATCAACATATTAATAAAATCCATTTCGATAAACGGGAATTAACTAAATACATCTGCCAACATTGTGATGCAGAATTTGAAAGTATAAGTGATTTAAACGCTCATAAATCAACCATTCATACGGAACATCGATGTACTTGTGATGTTTGCGGTATCACTTGCTGTAAGAAATCCGAATTGAAAGTTCACATGCGTATACATACCGGTGTCAAGCCGTATACGTGCGAAGAATGCGGTAAAACTTTCGTTCAGCACGGTTCAATGATAACACATAAAAAGTCGGTTCATAGTACTGAGAAGCCTTTTTCTTGCACGTATTGTGAGAAATCGTTTGCTATAAAAGGTGCTTTGACAAAGCATCTTGAGCATGTTCACTTAAAGGATAAGCTTGAGAAGAAATTTGTGTGCACGTTCTGTTCGAAAggtttcttgaagaaaaaggaTCTGACAGCGCACGCTCTGTGGCATACGGGTGAGCGAAATCAGAAATGTGATGTTTGTGGGAAGAGCTTTGTGAACATTGCTGCGCTGAAGAGACACAAACTGATACATTCCGATGAGAAGAAGCACGCTTGTGAGATATGCTCGAAGAGGTTTCACCAGAAATCAAATGTAAAAATCCACATGAAAGTGCATAATAAGACTAAGTAG
- Protein Sequence
- MLVCRLCLKLSPEESSKDISTLDGEQFKLILPEINFHSTKSPMICDLCLRSLDAAYTFKTSCMQTETLINSYKEIHGNVNLIEIYESNTVLDSFDEECGLLIGESLVKIADDNFDDSNVRNDHAYSSFHVSAGEEGREDLEDINLGIKEKDLNIPSSGSQQSSDKNYKCQQCSATFKKAFTLKQHMSTHFTEESRKDISTVDGDQFKLILPELDLSSIQSPVICDLCLRLLDEAYTFKTCCLQSEALINSYKEIHGNVNLIEIYESKTNLRDSFDEEWGSSLIEESSVKAEIADDSNIHTDYAYSSFHVSTGEKDSREDVGDINLRIKQEDLNGKTSGSQQLSEKNYKCQQCSANFKNTGSLKRHQSTHFTDRSFNCPICNKMFTMKRHRQEVHGAKTFNCNQCPLRFSAQRYLEQHIDRRHETSTNSDEITTKKEHKRHINHEHKIKKELKFKCPHCEDVSKTFENLQNHVKEQHNNTALYFCKLCARQFETSYKLKEHSDICPEKQFVCQICLKRYEHNSKLITHITLTHTSKNHHELICQTCGLLYKNKMSLKIHIKTQHLGIRRKRTKYTCEVCNKSFSKPTALRRHKLIHEIHTDFLCPVCQQGFKSKYYMHQHINKIHFDKRELTKYICQHCDAEFESISDLNAHKSTIHTEHRCTCDVCGITCCKKSELKVHMRIHTGVKPYTCEECGKTFVQHGSMITHKKSVHSTEKPFSCTYCEKSFAIKGALTKHLEHVHLKDKLEKKFVCTFCSKGFLKKKDLTAHALWHTGERNQKCDVCGKSFVNIAALKRHKLIHSDEKKHACEICSKRFHQKSNVKIHMKVHNKTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -