Agra005492.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- -
- Assembly
- GCA_963971325.1
- Location
- OZ020221.1:39417970-39429404[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0059 0.51 11.7 0.3 1 21 26 46 26 47 0.94 2 17 0.0059 0.51 11.7 0.3 1 21 95 115 95 116 0.94 3 17 0.0059 0.51 11.7 0.3 1 21 164 184 164 185 0.94 4 17 0.0059 0.51 11.7 0.3 1 21 233 253 233 254 0.94 5 17 0.0051 0.44 11.9 1.0 2 21 303 322 302 323 0.92 6 17 0.0059 0.51 11.7 0.3 1 21 371 391 371 392 0.94 7 17 0.008 0.69 11.3 1.4 2 21 441 460 440 461 0.92 8 17 3.5e-05 0.003 18.7 1.0 2 23 532 553 531 553 0.98 9 17 6.4e-05 0.0055 17.9 2.8 1 23 559 581 559 581 0.98 10 17 0.0011 0.094 14.0 1.6 2 23 637 659 636 659 0.97 11 17 2.9e-05 0.0025 19.0 0.1 2 23 666 687 665 687 0.97 12 17 0.0011 0.094 14.0 1.6 2 23 746 768 745 768 0.97 13 17 2.9e-05 0.0025 19.0 0.1 2 23 775 796 774 796 0.97 14 17 0.0019 0.16 13.3 1.9 2 23 855 877 854 877 0.96 15 17 0.014 1.2 10.6 1.7 1 21 936 956 936 957 0.93 16 17 0.00032 0.027 15.7 0.5 1 23 1022 1043 1022 1043 0.98 17 17 1.1e-05 0.00096 20.3 3.4 1 23 1049 1071 1049 1071 0.99
Sequence Information
- Coding Sequence
- ATGAGTTTGACTGAGCAAAATACATTAGTGAAACAAGAAATCGAGCCATGCGAAAAGTTGCCAGAAATTCAGCAATATATTTGTGAATTATGCAGTTTCACTTTTAGTAACGAAACTTATTTGGCAAATCACTACAACTTATGCAAAGATATGAAGAATCAGAATGATCGATTGGGTGTGAACACAAGGAACAgtctagaaaaaaggatgagtttGACTGAGCAAAATACATTAGTGAAACAAGAAATCGAGCCATGCGAGAAGTTGCCAGAAATTCCGCAATATATTTGTGAATTATGCAGTTTCACTTTTAGTAACGAAACTTATTTGGCAAATCACTACAACTTATGCAAAGATATGATGAATCAGAATGATCGATTGGGTGTGAACACAAGGAACAgtctagaaaaaaggatgagtttGACTGAGCAAAATACATTATTGAAACAAGAAATCGAGCCATGCGAGAAGTTGCCAGAAATTCAGCAATATATTTGTGAATTATGCAGTTTCACTTTTAGTAACGAAACTTATTTGGCAAATCACTACAACTTATGCAAAGATATGATGAATCAGAATGATCGATTGGGTGTGAACACAAGGAACATTCGAGAAAAAAAGATGAGTTTGAGTGAGCAAAATACATTAGTGAAACAAGAAATCGTGCCATGCGAGAAGTTGCCAGAAATTCAGCAATATATTTGTGAATTATGCAGTTTCACTTTTAGTAACGAAACTTATTTGGCAAATCACTACAACTTATGCAAAGATATGATGAATCAGAATGATCGATTGGGTGTGAACACAAGGAACAttctagaaaaaaggatgagtttGACTGAGCAAAATACATTAGTGAAACAAGAAATCGTGCCATGCGAGAAGTTGCCAGAAATTCAGCAATGTATTTGTGAATTTTGCGGTTTTACTTTTAGTAACGAAACTTATTTGGCAAATCACTACAACTTATGCAAAGATATGATGAATCAGAATGATCGATTGGGTGTGAACACAAGGAACATTCGAGAAAAAAAGATGAGTTTGAGTGAGCAAAATACATTAGTGAAACAAGAAATCGTGCCATGCGAGAAGTTGCCAGAAATTCAGCAATATATTTGTGAATTATGCAGTTTCACTTTTAGTAACGAAACTTATTTGGCAAATCACTACAACTTATGCAAAGATATGATGAATCAGAATGATCGATTGGGTGTGAACACAAGGAACAttctagaaaaaaggatgagtttGACTGAGCAAAATACATTAGTGAAACAAGAAATCGGGCCATGCGAGGAGTTGCCCGAAATTCAGCAATGTATTTGTGAATTTTGCGGTTTTACTTTTAGTAACGAAACTTATTTAGCAAAtcactacaacttttgcaaatATGTGAAGAATCAGAATGATCGACTGGGTGTGAACACAACCATTGTTGAAAAAGAATTATGCGAAAATGTAGAAATGCAGAACTCAGAAGCACCTAATAAAAATATCAAGGACGAACCAATGTTTGACATAAACATCGACTTTGATTTGGAATCCATTGAACTTCCAACGACGAAAACATTAGTCAAATCAAGGAAAGCAAagaaatgcacgatttgtggctACTCAACTTTGCGGGCAGATAACCTCAGGAGACACATGAACACGCACACAGTACAAAAGCAATTTAAATGCACCATTTGCAACTTCTCTGCTAGTCGATCAGATAGTCTCAGACATCATATGATAAGGCATAAAGTGACAGGTAAAAAAGAATTATTTGAAAGAGACATACCAAAATTAGAAGCATCTGACGAAAATATGAAGGCAAAACCAATgTATGATATAAACATTGATTTGGATTTGCAATCCATTGAACCTTCAACGACAGAAACATTAGTCAAATCAGGGAAAGCAAAGAAATGCACGGTTTGTGACTACTCAACTTTGCGGTCGGACAACCTCCAAAGACACATAAATAAAAGACACCCAGAAGTAAACCcaattaaatgcacaatttgcaaCTATGCAACTGCCCAACCAGGAAACCTCGAAGTTCACATGAAAAGTCATACAGTTACCGTTACAAAAGCATTACGTGAAGAAGACGTACAGAACTTAGAAACACCTGACGAAAACGGCAAAGCGAAAAAGGCAAAACCAATATACGACATAAACGTCGACTTGGATTCGAAGTCCATTGAACCTTCAACGACAGAAACATTAGTCAAATCAGGGAAAGCAAAGAAATGCACGGTTTGTGACTACTCAACTTTGCGGTCGGACAACCTCCAAAGACACATAAATAAAAGACACCCAGAAGTAAACCcaattaaatgcacaatttgcaaCTATGCAACTGCCCAACCAGGAAACCTCGAAGTTCACATGAAAAGTCATACAGTTACCGTTACAAAAGCATTACGTGAAGAAGACGTACAGAACTTAGAAGCACCTGACGAAAACGGCAAAGCGAAAAAGGCAAAACCAATGTCtgacataaatgtcgatatggATTTGGAATCCATAGAACCTTCCACGACGGAAACATTAGTCAAATCAGGGAAAGCACAGAAATGCACGTTTTGTGACTACTCAACTTTGCGGTCGGACAATCTCAAAAGACACATGATTAGACAACACACAGGAGTAAAGTCTGAATTATCAACAGGTCGCAGGCAACACAGGGCAAAGCCTAGAAAACCAAACACATTTGACTGCAAgaaaattCTAGAAAAAAAGATGAGCTTGATTGAGCCAAGTTCATTAGCAAAACAAGAAACCGAGGTGTTCGGAGAGTTGCCCAAAATTCAGCAATTTGCTTGTAAATTATGCGGTTTCACTTTTAGTAAAGAAACTTGTTTGGTAAATCACTATAATTTATGCAAAGATGTGAAGAGTGAGTATGATCGACTGGGTGTGAACGCAAccaTTGttaaaaaagaagaagaagaaatacagaACTTATCTAATGAAAATATCAAGGCTGAACCACCGTTTGACATAAACATCGTTTTGGATTTGGAATCCATTGAACCTTCAATGACAGAAACGTTAGTCAAATCAAGGAAAGCATTTCAATGCACGGTTTGTGGCTTAACTTTGCGGCTAGGTAGCCTCAGAAGACACATGAACAGCCACAGAGGAGGAAAGCGATTTAAATGCACTATTTGTCATTTCTCAACTGTTCGGTCAGATTCCCTCAAAAGACACATGATAACGCATACAGTTACAGTTGGTAGCTTGGTAGCTCCAGACAAAAACATGAAGCCGAAACCAGAGTAA
- Protein Sequence
- MSLTEQNTLVKQEIEPCEKLPEIQQYICELCSFTFSNETYLANHYNLCKDMKNQNDRLGVNTRNSLEKRMSLTEQNTLVKQEIEPCEKLPEIPQYICELCSFTFSNETYLANHYNLCKDMMNQNDRLGVNTRNSLEKRMSLTEQNTLLKQEIEPCEKLPEIQQYICELCSFTFSNETYLANHYNLCKDMMNQNDRLGVNTRNIREKKMSLSEQNTLVKQEIVPCEKLPEIQQYICELCSFTFSNETYLANHYNLCKDMMNQNDRLGVNTRNILEKRMSLTEQNTLVKQEIVPCEKLPEIQQCICEFCGFTFSNETYLANHYNLCKDMMNQNDRLGVNTRNIREKKMSLSEQNTLVKQEIVPCEKLPEIQQYICELCSFTFSNETYLANHYNLCKDMMNQNDRLGVNTRNILEKRMSLTEQNTLVKQEIGPCEELPEIQQCICEFCGFTFSNETYLANHYNFCKYVKNQNDRLGVNTTIVEKELCENVEMQNSEAPNKNIKDEPMFDINIDFDLESIELPTTKTLVKSRKAKKCTICGYSTLRADNLRRHMNTHTVQKQFKCTICNFSASRSDSLRHHMIRHKVTGKKELFERDIPKLEASDENMKAKPMYDINIDLDLQSIEPSTTETLVKSGKAKKCTVCDYSTLRSDNLQRHINKRHPEVNPIKCTICNYATAQPGNLEVHMKSHTVTVTKALREEDVQNLETPDENGKAKKAKPIYDINVDLDSKSIEPSTTETLVKSGKAKKCTVCDYSTLRSDNLQRHINKRHPEVNPIKCTICNYATAQPGNLEVHMKSHTVTVTKALREEDVQNLEAPDENGKAKKAKPMSDINVDMDLESIEPSTTETLVKSGKAQKCTFCDYSTLRSDNLKRHMIRQHTGVKSELSTGRRQHRAKPRKPNTFDCKKILEKKMSLIEPSSLAKQETEVFGELPKIQQFACKLCGFTFSKETCLVNHYNLCKDVKSEYDRLGVNATIVKKEEEEIQNLSNENIKAEPPFDINIVLDLESIEPSMTETLVKSRKAFQCTVCGLTLRLGSLRRHMNSHRGGKRFKCTICHFSTVRSDSLKRHMITHTVTVGSLVAPDKNMKPKPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -