Agra023658.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- ZNF296
- Assembly
- GCA_963971325.1
- Location
- OZ020227.1:1568194-1570625[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00012 0.011 17.0 3.7 1 23 350 372 350 373 0.95 2 15 0.0041 0.35 12.2 1.5 1 23 381 404 381 404 0.95 3 15 0.0014 0.12 13.7 4.4 1 23 409 432 409 432 0.97 4 15 0.033 2.8 9.4 1.8 3 20 447 464 445 466 0.92 5 15 4.1e-05 0.0035 18.5 0.2 1 23 472 495 472 495 0.95 6 15 0.0016 0.13 13.5 1.7 1 23 502 525 502 525 0.95 7 15 2.8e-06 0.00024 22.2 0.6 1 23 535 557 535 557 0.99 8 15 0.0089 0.76 11.2 1.4 1 23 563 586 563 586 0.93 9 15 0.0064 0.55 11.6 0.4 1 23 595 618 595 618 0.92 10 15 0.00037 0.032 15.5 0.1 3 23 625 645 624 645 0.98 11 15 1.8e-06 0.00016 22.8 0.5 1 23 651 674 651 674 0.97 12 15 0.00065 0.056 14.8 0.9 1 23 680 703 680 703 0.97 13 15 0.00015 0.013 16.7 0.4 1 23 712 734 712 734 0.96 14 15 5.4e-06 0.00046 21.3 2.6 1 23 740 762 740 762 0.98 15 15 1e-05 0.00087 20.4 2.3 1 23 767 789 767 789 0.98
Sequence Information
- Coding Sequence
- ATGTCTGTTTGTCGATTTTGTTTAAAATCATCACCCGAAGATTTCTGCAGGAAAATAACAAGCATAGATGACAAACAATTTAAGCTGATACTACCAGAAATTGACTTGAGCTCAATAGAATCACCCGTAATATGTGATCTGTGCGTAAGATTACTAGACCAAGCTTACACTTTTAAATCATGCTGTCTACAATCCGAAAAAGTTATAAACAACTACAGAGAAGTACACGGTTGCATTAACTTAATCGAAATACACAAAAGCATGAATTTTGATGAAGAAGATCATTTACTTATTGGAGAATCACTTGTGAAAACTGAACTTGGAGATAATAATACAATCGAAATACACAAAAGCACCAATTTTGATGAAGAAGATCATTTACTTATTGGAGAATCACTTGTGAAAACTGAACTTGGAGATAATAATACAATCGCAATACACAAAAGCACCAATTTTGATGAAGAAAATCATTTACTTATTGGAGAATCACTTGTGAAAACTGAATTTGGAGATAATAATACAATCGAAATACACAAAAGCACCAATTTTGATGAAGAAAATCATTTACTTATTGGAGAATCACTTGTGAAAACTGAATTTGGAGATAATAATACAATCGCAATACACAAAAGCACCAATTTTGATGAAGAAAATCACTTACTTATTGGAGAATCACTTGTGAAAACTGGAGATAATAATACAATCGAAATACACAAAAGCACCAATTTTGATGAAGAAAATCATTTACTTATTGGAGAATCACTTGTGAAAACTGAATTTGGAGATAATAATACAATCGCAATACACAAAAGCACCAATTTTGATGAAGAAAATCATTTACTTATTGGAGAATCACTTGTGAAAACTGAACTTGGatataataatacaaataacTCGAATTACGATGATTTCAATGCATCTACGGATGAAGAATGTAGTGGTGAgggtttaaaaaatataaacgtgGATATTAAAGAGgaagatttaattaataaagctTCTGGGAGCACCGATAGCTTAAATCAACAGAACATGccagaaaaaaaatttaattgcttGGTATGCAATAAAAAATTTGCAGTACGTCGATATCTAACTAATCACATGAGACAGCATCATCCCCAGGATAAAAAACTAAAGTTTGAATGTAAATTGTGTGGAAAGGGCTTTATCCAAACTTGCATACTTAAAAAGCATCAGCAAGCAGTCCACGGTGAAAAAAAATTCCAATGCAATCACTGCTCATTAAAATTTTCAGCCAGGAGGTATCTACAAAAACACATTGATCGAAAACACAcaacatttgatgaaaacgatgGTACCGTGGTACTAAATTGTTGTAGACATTGCGCGAAGCAATTCGAAACTTCAAAAGAACTGAGAGAACACTTAGCGGTATGCAAAGAGAAGCAATACCCTTGCCCAACATGCGGGAGACGTTTCGAATACAATTATAAACTCGTCGCGCACATAACCCAAATTCATTCGCCGGATAACCGCAAACACGCGTGCCAAACTTGCGGAGTTACATACAGAAATAAAACGATGTTGGACAGTCATATTCAAAAGCAACATTTAGGTATTCGCCGATCACGCACACGATATACGTGCGATGTGTGCAACAGAAGTTTTTCAAAACCGATAGCACTGCAACGGCATAAATTGACGCACGAAGTTAATACAGATTTTCTGTGCCCCGTTTGCGAGAGAGGTTTCAAATCGAAATTTTTTATGCATCAGCATATAAACGAGGTCCATTACGACAGACGAGAATTGACTAAATACATATGCCGGCATTGCGACGCGGAATTTGAGAAAGCAGGCGATTTGAACACTCACAAATCCGAGGTGCACACGGAATTACGGCGTGCGTGTGAAGTATGCGGCATTACCACTGCGAAAAAGTCCCAGATGGTTGTTCATATGCGTGTCCATACGGGTGTTAGGCCGTACGCGTGCGACGAATGCGATAAATCTTTTAATCAACGTAGTTCATTGGTGCTTCATAAACGGTCTGTACACAGCAATGAAAGACCTTATTCGTGTACTTATTGTCAGAGTAGGTTTGCGTTAAAAGGTACGTTAACGAAGCATATCGAACGTGTTCACTTAAAGGACAAATTGGAGAAGAAATTTGCTTGCACCGTTTGCTCTAAGAAGTTTATGAGAAAACCGCAACTCTCGGAGCATATGATATGGCATAGCGGGGAACGCAACCACAAGTGTGACGTTTGCAGTAAGACGTTTGTCAGCAGAAGCACCTTGAGCAGACACCAACTCATACATGCTGAGAAAAAGTATGAATGCCAGATATGCTTGAAGAAATTCCATCAGAGATCCAATCTAAATATTCATATTAAAGTACATAAGAAGACATAA
- Protein Sequence
- MSVCRFCLKSSPEDFCRKITSIDDKQFKLILPEIDLSSIESPVICDLCVRLLDQAYTFKSCCLQSEKVINNYREVHGCINLIEIHKSMNFDEEDHLLIGESLVKTELGDNNTIEIHKSTNFDEEDHLLIGESLVKTELGDNNTIAIHKSTNFDEENHLLIGESLVKTEFGDNNTIEIHKSTNFDEENHLLIGESLVKTEFGDNNTIAIHKSTNFDEENHLLIGESLVKTGDNNTIEIHKSTNFDEENHLLIGESLVKTEFGDNNTIAIHKSTNFDEENHLLIGESLVKTELGYNNTNNSNYDDFNASTDEECSGEGLKNINVDIKEEDLINKASGSTDSLNQQNMPEKKFNCLVCNKKFAVRRYLTNHMRQHHPQDKKLKFECKLCGKGFIQTCILKKHQQAVHGEKKFQCNHCSLKFSARRYLQKHIDRKHTTFDENDGTVVLNCCRHCAKQFETSKELREHLAVCKEKQYPCPTCGRRFEYNYKLVAHITQIHSPDNRKHACQTCGVTYRNKTMLDSHIQKQHLGIRRSRTRYTCDVCNRSFSKPIALQRHKLTHEVNTDFLCPVCERGFKSKFFMHQHINEVHYDRRELTKYICRHCDAEFEKAGDLNTHKSEVHTELRRACEVCGITTAKKSQMVVHMRVHTGVRPYACDECDKSFNQRSSLVLHKRSVHSNERPYSCTYCQSRFALKGTLTKHIERVHLKDKLEKKFACTVCSKKFMRKPQLSEHMIWHSGERNHKCDVCSKTFVSRSTLSRHQLIHAEKKYECQICLKKFHQRSNLNIHIKVHKKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -