Basic Information

Insect: Aphodius granarius
Gene Symbol: -
Assembly: GCA_963971325.1
Location: OZ020221.1:988246-993568[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0012 0.1 13.9 1.7 1 23 78 100 78 100 0.98

2 17 3.7e-07 3.2e-05 25.0 2.2 2 23 107 128 106 128 0.96

3 17 2.5e-05 0.0021 19.2 1.7 1 23 134 157 134 157 0.98

4 17 1.3e-05 0.0011 20.1 2.6 1 23 163 186 163 186 0.98

5 17 0.0011 0.091 14.1 0.7 1 23 192 214 192 214 0.96

6 17 0.061 5.3 8.5 3.1 1 23 220 243 220 243 0.98

7 17 0.016 1.4 10.3 0.6 1 19 279 297 279 299 0.96

8 17 0.00017 0.014 16.6 4.3 1 23 394 416 394 416 0.99

9 17 0.003 0.26 12.7 4.1 1 23 422 444 422 444 0.98

10 17 4.4e-05 0.0038 18.4 3.6 1 23 450 473 450 473 0.98

11 17 0.00018 0.015 16.5 1.5 1 23 479 502 479 502 0.98

12 17 7.6e-05 0.0065 17.7 0.9 1 23 508 530 508 530 0.99

13 17 0.032 2.7 9.4 3.9 1 23 536 559 536 559 0.98

14 17 0.00066 0.056 14.7 0.7 2 23 569 590 568 590 0.96

15 17 4.5e-06 0.00039 21.5 0.9 1 23 596 618 596 618 0.99

16 17 0.00031 0.027 15.8 5.6 1 23 624 646 624 646 0.99

17 17 0.0031 0.26 12.6 0.2 1 23 652 675 652 675 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0012	0.1	13.9	1.7	1	23	78	100	78	100	0.98
2	17	3.7e-07	3.2e-05	25.0	2.2	2	23	107	128	106	128	0.96
3	17	2.5e-05	0.0021	19.2	1.7	1	23	134	157	134	157	0.98
4	17	1.3e-05	0.0011	20.1	2.6	1	23	163	186	163	186	0.98
5	17	0.0011	0.091	14.1	0.7	1	23	192	214	192	214	0.96
6	17	0.061	5.3	8.5	3.1	1	23	220	243	220	243	0.98
7	17	0.016	1.4	10.3	0.6	1	19	279	297	279	299	0.96
8	17	0.00017	0.014	16.6	4.3	1	23	394	416	394	416	0.99
9	17	0.003	0.26	12.7	4.1	1	23	422	444	422	444	0.98
10	17	4.4e-05	0.0038	18.4	3.6	1	23	450	473	450	473	0.98
11	17	0.00018	0.015	16.5	1.5	1	23	479	502	479	502	0.98
12	17	7.6e-05	0.0065	17.7	0.9	1	23	508	530	508	530	0.99
13	17	0.032	2.7	9.4	3.9	1	23	536	559	536	559	0.98
14	17	0.00066	0.056	14.7	0.7	2	23	569	590	568	590	0.96
15	17	4.5e-06	0.00039	21.5	0.9	1	23	596	618	596	618	0.99
16	17	0.00031	0.027	15.8	5.6	1	23	624	646	624	646	0.99
17	17	0.0031	0.26	12.6	0.2	1	23	652	675	652	675	0.96

Sequence Information

Coding Sequence: atgttttacttGTCCTTAGATGAACCTAAAGTGGAAATTAAAGGGGAAATAGGAGAATTGCCTGAAGAACAGACAACAGAAACTGAACCTATATGTGATGTAAAATTGCAACAAATAGATATCGGTGAGCCCACCATCTCCCTGTCTTCTTGTACTGAATCTAAACAATCTCTTGAAGCCCAAGAGCCAGAAACACTTGAAGAGACTGAGACCCATCCAGAAAAAAATACCTATAACTGCAATTTTTGTGACTATGCTTCTACAAGCCGTTGGAACGTAAAAAGGCATCTCAAATACCACACAGCGGAGCGTCCCTTAAGCTGTACCATATGCGACAAGGACTTCAAACACCGGTCTGATCTGACGGCCCACATGCGACAACACAGTggagaaaaaccgtttaaatgtGAGATTTGTAACTATGCTGCTATACGAAGGCATAGCCTACAGGTTCACATGCGAACAAAACATACGAAAGAGAAGCCGTATAAATGCGATAGGTGTGATTATGCTGCTACACAGAGTTCTCACCTCAACAACCATATGAGGAGCAAACATACCGGCGAAAGACGGTTTGAATGTCCGATGTGCGATCATAAGTCTTTGCAGAATTCCGCTTTGGTCCTGCACATGCGCACGCACACCAAGGAGAAGCCGTTTCGCTGTCTCTATTGTGACTATGCTAGCTCGCAGAATAAATGCATCGGATCGCATATGAGGAGTAAACATAAGGATAAGCTGGACGATATCAAAGGAGGTTCTGTAAATATCATGAGTCCCTTGGTGAAGCAAGAAGAGTCAGGGGAAAACGTGAATTTGACTCAGCCTGAGCAATTTACATGTGATTTTTGCGGGAGCAGTTTCGATCAGGAAATACACTTGGCAAATCACTTCGAGTTTTGTGAACGTATCATGGATTGCGACGACAAAACCTCAGTCACAAcTGCTCTGAAAGTTGAAATTAAAACTGAGGAGACTGAAATTACTGAAGGGGATGAAGTGCTACAAGACAATCCAATAGCAGATATGTGCGACGTAAGATTAGATCCTAGCAACTTTGAGAACCCCTTGGCCTCTTTTACACCAGCTCTTGATACCCCAGATGAACAATTCATCGACTCACAAAGCACAGAAATAACCGATGAACAATTAGATCATGATTCGGTCGCAGAAAAACTTTACAAATGCGAATATTGTGACTACTCATCTACATATCACCGTTACCTAGTATCGCACATGCGATCGCACATCTGCGACAAGCCGCACAAGTGTACCGAGTGCGATTACTCGACTTGGCGACGTTCGTTCCTCACTCTGCACATGCGAAAACACACGGGGGAAAAACCGTTCTCGTGCGATTTGTGCGATTATTCGTGTTCGCGAAAGAGCTACCTTCAGCTACACGAACGCACAAATCACACGAAAGAGAAGCCTTATAAATGTGCGCAGTGCGATTACGCGAGCGCACAAGCCAGCCACCTCAAATACCACATAAAAAGCAAACATACGCGAGAACGCGAGTTCCAGTGTCTAGTCTGCGATTATATGGCGATACAAAGCTCGGATTTGCTTCACCACATGAAGACGCACACGACCGAGAAATTATTCAAGTGCGATTTGTGCGATTTCGGGGTGAACCATCGCAATTTCCTCGTGCATCACATCAAAACGACTCACCCGAGCGGTAACGAAGAACCGACTTTGAAATGCGCGACGTGCGATTACACGACGAAGCGGCAGGAGACGCTGGATCGTCACGTGCGCGGTCACACGGCGAAGAAGCCGTTCAAGTGTAAGGTGTGCGATTTCGCGAGCGGGCAGAGTTCTGGGCTGAAGAGGCATATGAGGACGCACACGAAGGAGAAGCCGTATCGGTGCACGTTCTGTAAGTATTCGTGCGCCGACCAGCAGAATCTGAAGCGGCATAAGTTGACGCATACCGGGGAGAAAAGGTACAAGTGCGAGCTGTGCGATTATAGTGCGGCTAGGCAAGGGCAGGTTAAGACGCACGTTTTGAGCAGGCATAAAGATGGGAAGCGGCTGGAGCCTGAGTGTGTTTTGTTGGTGCCTAAGGTTGAGCCGTTGGATAGTAGTTGA
Protein Sequence: MFYLSLDEPKVEIKGEIGELPEEQTTETEPICDVKLQQIDIGEPTISLSSCTESKQSLEAQEPETLEETETHPEKNTYNCNFCDYASTSRWNVKRHLKYHTAERPLSCTICDKDFKHRSDLTAHMRQHSGEKPFKCEICNYAAIRRHSLQVHMRTKHTKEKPYKCDRCDYAATQSSHLNNHMRSKHTGERRFECPMCDHKSLQNSALVLHMRTHTKEKPFRCLYCDYASSQNKCIGSHMRSKHKDKLDDIKGGSVNIMSPLVKQEESGENVNLTQPEQFTCDFCGSSFDQEIHLANHFEFCERIMDCDDKTSVTTALKVEIKTEETEITEGDEVLQDNPIADMCDVRLDPSNFENPLASFTPALDTPDEQFIDSQSTEITDEQLDHDSVAEKLYKCEYCDYSSTYHRYLVSHMRSHICDKPHKCTECDYSTWRRSFLTLHMRKHTGEKPFSCDLCDYSCSRKSYLQLHERTNHTKEKPYKCAQCDYASAQASHLKYHIKSKHTREREFQCLVCDYMAIQSSDLLHHMKTHTTEKLFKCDLCDFGVNHRNFLVHHIKTTHPSGNEEPTLKCATCDYTTKRQETLDRHVRGHTAKKPFKCKVCDFASGQSSGLKRHMRTHTKEKPYRCTFCKYSCADQQNLKRHKLTHTGEKRYKCELCDYSAARQGQVKTHVLSRHKDGKRLEPECVLLVPKVEPLDSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -