Agra023134.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- -
- Assembly
- GCA_963971325.1
- Location
- OZ020226.1:20631238-20632557[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00017 0.014 16.6 0.1 3 21 69 87 68 88 0.96 2 12 0.0019 0.16 13.3 4.9 1 23 95 117 95 117 0.98 3 12 1.4e-07 1.2e-05 26.3 0.7 1 23 123 145 123 145 0.98 4 12 1.1e-05 0.00095 20.3 0.9 1 23 151 173 151 173 0.96 5 12 0.00015 0.013 16.7 3.2 1 23 179 201 179 201 0.99 6 12 0.0002 0.017 16.3 4.5 1 23 210 233 210 233 0.96 7 12 5.3e-08 4.5e-06 27.6 2.7 1 23 239 262 239 262 0.98 8 12 3.5e-05 0.003 18.8 3.1 1 23 268 290 268 290 0.98 9 12 3.8e-05 0.0032 18.6 0.2 1 23 296 318 296 318 0.98 10 12 1.4e-06 0.00012 23.1 0.4 1 23 324 346 324 346 0.98 11 12 1.4e-05 0.0012 20.0 1.6 1 23 352 374 352 374 0.98 12 12 0.00018 0.016 16.5 0.6 3 23 382 403 380 403 0.97
Sequence Information
- Coding Sequence
- ATGGATTTCGAAGAAAAAGTTAAAATAAAGCAAGAACAAACTTTGGTAGTTAAAGATGAACCTATTTCTGATGACGAGATGAATAGTTACGATGAATTTGATcaagtaaatataaaaatggagcATTCTTCCGAATGGGATCTCTCAGAAAAGATCGAATCTTCTCAAGATGACAGCGTTGATCTAGTAATATCAGACAACGCGTGCAAGATCTGCAAGCAGACTTTCGATTCCCTATCAGAGTTAGAAGATCACATACGTCAGCCAAACATTAACCGTAATTTCACTTGCTGCGCGTGTTCTAAGAAATTCCGGGACATGACCCAACTCCAGGTGCACACCCGCAAACACACCGGCGCCAAACCGTACATCTGTAAGATCTGTTCGAAAGGCTTCTCGATAAACGGCAATTTAAACAAGCATATGCGCACGCACACCGGCGAACGACGTTTCGAATGCGAAATTTGCAATAAAAAGTTTACCCAATTCGCGCATTTAGAGGACCACGTAATCCTACATTCCGGTGAGCGTCCCTTTAAGTGTAATCAATGTAACGGTCAATTCAGGACAAAGTTTAGGTTGAACAGACATATTAAAATTCACAAAGCGGAACGTGCCCCGAAAAAATTCCCTTGCGATTTCTGCTCGAAATCGTTTGCATATAAACACCAGCTGACGTTACACCTTTGCAGTGTGCATGCCGAAGAACGTCCTTTTATGTGTTCTTACTGCCAGAAGTCATTTACAAATCAAAATAATTTACGCACTCATCTCCGTACTGTTCATTCTGAGGAGAAGACATTCCATTGTGGGAGTTGCGATCGTAAGTTTGCCCTAAACTCTCAGTTACAGAGACATCTGAAGACACATCTTGGGTTGCGGCCGTTTGTTTGTGAGATTTGTATGCGTGGTTTTCCAAATCAGCAAAATTTAAATCGACATGTTAAAATACACTCAGGAGATAGGCCTTTTGTGTGCCCGACATGCGAGAAAGGTTTCTTATCGCAAGAAAATCTCACTAGACATATCCGGACGCATTCCGGTGTTAAACCGTATGAATGTAAGGAGTGTGGGAAACGGTATGCCCACAGTACGACTGTTAAAGAGCACATGGTGACGCATACGGGGCAAAAGCCGTTTGGTTGTGGGATTTGCGATAAGAATTTCGCCCTGAATAAAATGTTGTATAAACATATTCGGTCAAAACATCCCGAGGAGGCCAGTTATCTGAGAGATACGATGGCTAAGAATTCAAAATATCCCATTCGGTTTGTGCCTGTGAAATCGGAGATTGTGGACCTTAAGATTGAGGATACGTAG
- Protein Sequence
- MDFEEKVKIKQEQTLVVKDEPISDDEMNSYDEFDQVNIKMEHSSEWDLSEKIESSQDDSVDLVISDNACKICKQTFDSLSELEDHIRQPNINRNFTCCACSKKFRDMTQLQVHTRKHTGAKPYICKICSKGFSINGNLNKHMRTHTGERRFECEICNKKFTQFAHLEDHVILHSGERPFKCNQCNGQFRTKFRLNRHIKIHKAERAPKKFPCDFCSKSFAYKHQLTLHLCSVHAEERPFMCSYCQKSFTNQNNLRTHLRTVHSEEKTFHCGSCDRKFALNSQLQRHLKTHLGLRPFVCEICMRGFPNQQNLNRHVKIHSGDRPFVCPTCEKGFLSQENLTRHIRTHSGVKPYECKECGKRYAHSTTVKEHMVTHTGQKPFGCGICDKNFALNKMLYKHIRSKHPEEASYLRDTMAKNSKYPIRFVPVKSEIVDLKIEDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -