Agra005759.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius granarius
Gene Symbol
-
Assembly
GCA_963971325.1
Location
OZ020221.1:42192443-42193858[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.00028 0.024 15.9 0.2 1 23 74 96 74 96 0.98
2 14 0.0042 0.36 12.2 0.6 1 23 105 127 105 127 0.98
3 14 0.0074 0.64 11.4 6.2 1 23 134 156 134 156 0.99
4 14 2.6e-05 0.0023 19.1 3.3 1 23 162 184 162 184 0.99
5 14 5.4e-06 0.00046 21.3 3.1 1 23 190 212 190 212 0.98
6 14 5.3e-05 0.0046 18.2 1.2 1 23 218 240 218 240 0.99
7 14 7.9e-05 0.0068 17.6 0.2 1 23 246 268 246 268 0.97
8 14 2.5e-06 0.00022 22.3 0.4 1 23 274 296 274 296 0.99
9 14 0.00034 0.03 15.6 2.3 2 23 303 325 302 325 0.95
10 14 2.2e-05 0.0019 19.4 2.4 1 23 331 353 331 353 0.99
11 14 5.9e-05 0.0051 18.0 2.8 1 23 359 381 359 381 0.99
12 14 0.0013 0.11 13.8 0.5 1 23 387 410 387 410 0.94
13 14 5.4e-05 0.0046 18.2 0.4 1 23 413 436 413 436 0.96
14 14 7.1e-06 0.00061 20.9 0.4 1 23 440 462 440 462 0.98

Sequence Information

Coding Sequence
atgacgtcacaAATGACGCTTCTTAGTTCAAATCAACTCTACCAACAAATAATCTGTATAACACCTATCAATTTTTTCAGAATCGACGTAAATCTTGATGAAGCTGACGCATCAAAGCGCCCAAAGACCGAACCAGACACAGAAACAACCCCACCTAAGCGCAAACGGAAGCGTACAGACCCCGAGAACAAAGAGTACAGGACACCGCGCGAAAAACCTTACAAATGCGACATCTGCTCTTACTCCGCCACGAATCCAGAATTCCTAGAAGCTCATCTAAGCCGACACTCGAAGAAAGCAACAAAAGGCGAATACAAATGCAGCAGATGCGGCGACGTCCAAGAAAACGCCTATAAGCTGCGTGTCCACATGAGGACACACCAAGACGAGGAAAAACCTTACCAGTGCGAAGAGTGTGATTACTCGACCGTACACCAATGTTATTTCTTGTTGCATCGTCGAAAACACACCGGCGAAAAAGCCTATAAGTGCGAGTACTGTGACTATGCTAGTACGCGTAAGGAACACCTCGCGACGCACACGAAACGCCACACGAACGAGAAACCGTTCAGCTGCAGCGAGTGCGATTATTCATGCATTACACGAACAACGCTGACGGTCCATATGCGTACTCACACCAAGGAAAAACCGTATAAATGCGAGAAATGTAATTACCGCACCATTTCGGCGGGTCACTTAAGCGCACACGCGCGCACGCATTCTAAGGAGAAACCGTTCGCCTGTACGATTTGCGATTCCGCTTTTAGCGCCCGCCCTCAGCTGCGTACGCACATCCGATCGCACACGAAAGAAAAGCCGTACAAATGCACAATATGCGATTTTGCCGCGACGCAGAGTTCTAACCTAAAATTACACATGAACATCCATGGCACGCGGAAAGACCTCAAGTGCGCGCATTGTGAATATTCAACGTATTCCCGATCTAACCTACAAACGCACATTAAGGGAAAACATTCCCGCGAAAAGTCATTTAAATGTCCCAAGTGTGATTACGCGTGCGCGTTGCAATACACCCTGAAAACCCATATGAAGGTCCACAGTGAGGAAAAGGCGTATAAATGTACGTTGTGTGATTATGCTACAAGGCATGGATCCACCTTGAAGAACCACATGCGTTTGCATAATGGCGAAAAGCCGTATAAATGTCCGCATTGCGACTATGCTACTATTCAGAGTGGTAATCTGGCGTTTCACGTTAAAGTAAATCACTCGGAATTTAAATGTGACGAGTGTGATTTTGTGACAACGCGACAAAAGGACTACCGTGCGCATGTGCGCGCCGCGCACGGCGAGCAATTCGAGTGCGCGGTATGCGATAAGGTGTATAAGAGTCGTACGCAACTGGCTAAACATGAGAGGTTGCACGAAGGCGAAGAAAGCGAAGAAGACGATTAA
Protein Sequence
MTSQMTLLSSNQLYQQIICITPINFFRIDVNLDEADASKRPKTEPDTETTPPKRKRKRTDPENKEYRTPREKPYKCDICSYSATNPEFLEAHLSRHSKKATKGEYKCSRCGDVQENAYKLRVHMRTHQDEEKPYQCEECDYSTVHQCYFLLHRRKHTGEKAYKCEYCDYASTRKEHLATHTKRHTNEKPFSCSECDYSCITRTTLTVHMRTHTKEKPYKCEKCNYRTISAGHLSAHARTHSKEKPFACTICDSAFSARPQLRTHIRSHTKEKPYKCTICDFAATQSSNLKLHMNIHGTRKDLKCAHCEYSTYSRSNLQTHIKGKHSREKSFKCPKCDYACALQYTLKTHMKVHSEEKAYKCTLCDYATRHGSTLKNHMRLHNGEKPYKCPHCDYATIQSGNLAFHVKVNHSEFKCDECDFVTTRQKDYRAHVRAAHGEQFECAVCDKVYKSRTQLAKHERLHEGEESEEDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00137222;
90% Identity
iTF_00137222;
80% Identity
-