Agra003118.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- -
- Assembly
- GCA_963971325.1
- Location
- OZ020221.1:12680068-12686217[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0022 0.19 13.1 0.6 2 23 54 76 53 76 0.94 2 22 0.034 2.9 9.4 0.3 1 23 91 113 91 113 0.97 3 22 0.0036 0.31 12.4 0.5 1 23 117 139 117 139 0.94 4 22 1.2 99 4.5 0.3 1 23 144 168 144 168 0.87 5 22 0.25 21 6.6 4.0 1 13 174 186 174 196 0.76 6 22 0.034 2.9 9.3 1.0 2 23 203 225 202 225 0.96 7 22 2.9e-06 0.00025 22.1 1.7 2 23 237 258 236 258 0.97 8 22 1.3e-05 0.0012 20.0 0.7 3 23 271 291 269 291 0.96 9 22 1.5e-05 0.0013 19.9 3.5 1 23 297 319 297 319 0.98 10 22 0.002 0.18 13.2 5.2 1 23 325 347 325 347 0.98 11 22 0.0011 0.094 14.0 0.5 1 22 353 374 353 374 0.96 12 22 0.0015 0.13 13.6 1.3 1 23 410 432 410 432 0.98 13 22 0.0016 0.14 13.5 0.3 1 23 452 474 452 474 0.98 14 22 0.033 2.9 9.4 0.5 1 23 478 500 478 500 0.98 15 22 1.5 1.2e+02 4.2 2.2 1 23 505 528 505 528 0.96 16 22 0.069 6 8.4 4.9 1 23 534 556 534 556 0.95 17 22 0.016 1.4 10.4 0.5 3 23 564 585 562 585 0.91 18 22 0.0002 0.017 16.4 0.5 2 23 597 619 596 619 0.95 19 22 8.6e-05 0.0074 17.5 1.5 3 23 630 650 628 650 0.96 20 22 1.1e-05 0.00098 20.3 3.7 1 23 656 678 656 678 0.99 21 22 4.4e-06 0.00038 21.6 4.6 1 23 684 706 684 706 0.97 22 22 0.0005 0.042 15.1 0.2 1 21 712 732 712 733 0.95
Sequence Information
- Coding Sequence
- atgtccctaaactcaacgtcaagcggatgccaggagagagatGGGTATGTGGTTCCAACAAGACCTAATGCGTTGGGCACCCGTCTGCTCGTTCTGTCTCGCGCATCTGTGTTGATCAAAACAGATAAGTCAAGGAAAAAGGTTCGAAGAAAAGTGTGGCCTTGTAAGAAATGTAATGAGGTATTTGGATCATTTAAGCTCTTAAAGATACATAGGAAGGAATATCATTATAGAAGTACGAAATACGTTTATAACGAAttcgaaaatatttacaaatgcaATGTTTGCCCGCACATCACAGATAGAAGAGCTGAGATAGAAAGCCATGTACAGGAGCACAGCGATCCGTTCGAATGCGATCCTTGCGGAAAAACCTTTGAAAGTGCTTATAAGTACGCTCTCCATATGTATTTCCACGGTTCCGACCAGTTCATGTGCCCTCTGTGTGATGATTACAAAACCTTACGGAAAAACTCGTTGCTGatgcatataaataatatacacCTACAGAATTTTACCTATAGATGTCAGTATTGCGGCAAAGGATTTTGTGACGTTCTTAAACATAAAGAGCACGAGAATTCTCATCTTGGAGCGCAACAACTGACTTGCGTCGTTTGCAACAAAGAGTTCTTATACTCGAGATCGTTGCTGACACACCAGCAAAAATACCATAGAGTGACAATTGAAGGGACACTACTCCCAAACCAGTGCCATGTCTGCGGAAAAGTGTTTGTTAAGTCTGAAACATTAACTAAACATCTTATAAAACATGATATGATTGCCGAAGGTGGCATGAAGGACCATTTGTGTGATGTTTGCGGAAAGACTTTCCGGGTAAAAGAGGGATTAATAGATCACTACAGAATGCACACTGGATATAAGCCTTACTCGTGTTCATATTGTCCGAAGACGTTTTCTAGAAGGTGTTACCTAATTATGCACGAACGCATTCACAGCGGTGAGCGGCCCTTTATGTGCAAATTCTGTGGAAAATGCTTCAATCAGGCCGGTTCACATCGTATACATGTTCGTACGCATACCGGTGAGCGTCCATACATCTGCCATCTCTGCGAAAAGGGATTTGTCTCAAGAACGGTTTTGAACCAACATTTAAAAACATGCAAAGGATTATTAAGTTCTCTCAAAATTCACATAAAATATCCTTTCAGGGAGCTGAGAAGACTTAGACCTAAGGCAAAGATTAGCaagaaagaaaagaaagcaTTTTCGTGTAAGAGGTGTGATGAATTGTTTTCAAGCAAACTTTTGCTCGCGAAACACAAGAAAGTGCATTTGCAGCAGTATGACGAAAAGCAATATAATTATACATATAATACAATTGAAGACACCTTCACTTGTAATACATGCGAAGCAGAATTTAGCAAAAAGGAGGAAATAGAGACACACATTTTGAGTCATGAGAAAAAGTATGAATGCACCACTTGTAGTGAAGTATTTTGGTCACCATATAAATATTCGGTACATGTACAAAAGCATACAAAGGATTTATTTTGCTGTCCGTTGTGCGAGTTTAAAACACAACGAGTGACGTCAATGTTGCAACACATCAATAGGTTACACCTGAAGAAGCACTTATACTACTGCCGACATTGCGGGAAAGGATTTGACGACTCTTTGTTTTATAAGGAACATGAGCAACATCATGTCTCAGCACGACCAATAGTATGCATAGTTTGCAAAAAGGAATTCGCATATTCAAGATACTTGACCGTCCACCAAACAAAGAGGCATCGACCGGACATTCTTGGAGTTGAACCAAAAAATCAGTGTCCCGTATGCAAGAAAATATTTTCTAAGGAGGAGACGGTAAAGAAGCATATGGAATTACTTCATTCCAATAAGCCAAGACCAAAGAAACACTTGTGCGACATATGCGGAAAAGGATTTTccataaaaaataaacttacaAGTCATTATCGCGTTCACACTGGACATAAGCCATACAAATGTAGTTATTGCGAGAAATGTTTTACACAAAGAGAATATCTCGTAATGCACGAACGCATACATAGTGGAGTCAAGCCTTATTGTTGTGTTTATTGTGGAAAATGTTTTAATCAAGATGCGTCACTGAGGATTCACATGAGGACCCATACTGGGGAACGCCCGTACGTCTGCCATTTATGTGGTAATGGATATGTTAGCAGTAGTTCTCTTAAAATTCATCTGAATAATTGCACTGGGTTTGCTAACAAATAA
- Protein Sequence
- MSLNSTSSGCQERDGYVVPTRPNALGTRLLVLSRASVLIKTDKSRKKVRRKVWPCKKCNEVFGSFKLLKIHRKEYHYRSTKYVYNEFENIYKCNVCPHITDRRAEIESHVQEHSDPFECDPCGKTFESAYKYALHMYFHGSDQFMCPLCDDYKTLRKNSLLMHINNIHLQNFTYRCQYCGKGFCDVLKHKEHENSHLGAQQLTCVVCNKEFLYSRSLLTHQQKYHRVTIEGTLLPNQCHVCGKVFVKSETLTKHLIKHDMIAEGGMKDHLCDVCGKTFRVKEGLIDHYRMHTGYKPYSCSYCPKTFSRRCYLIMHERIHSGERPFMCKFCGKCFNQAGSHRIHVRTHTGERPYICHLCEKGFVSRTVLNQHLKTCKGLLSSLKIHIKYPFRELRRLRPKAKISKKEKKAFSCKRCDELFSSKLLLAKHKKVHLQQYDEKQYNYTYNTIEDTFTCNTCEAEFSKKEEIETHILSHEKKYECTTCSEVFWSPYKYSVHVQKHTKDLFCCPLCEFKTQRVTSMLQHINRLHLKKHLYYCRHCGKGFDDSLFYKEHEQHHVSARPIVCIVCKKEFAYSRYLTVHQTKRHRPDILGVEPKNQCPVCKKIFSKEETVKKHMELLHSNKPRPKKHLCDICGKGFSIKNKLTSHYRVHTGHKPYKCSYCEKCFTQREYLVMHERIHSGVKPYCCVYCGKCFNQDASLRIHMRTHTGERPYVCHLCGNGYVSSSSLKIHLNNCTGFANK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -