Agra004940.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- -
- Assembly
- GCA_963971325.1
- Location
- OZ020221.1:32133699-32143608[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.58 50 5.5 4.6 1 23 212 235 212 235 0.91 2 21 0.015 1.3 10.4 1.1 2 23 402 421 401 421 0.95 3 21 1e-05 0.00085 20.5 0.9 3 23 429 449 428 449 0.97 4 21 0.00014 0.012 16.9 1.0 2 23 456 477 455 477 0.97 5 21 0.00031 0.026 15.8 2.9 2 23 483 504 482 505 0.95 6 21 4.4 3.8e+02 2.7 0.3 1 23 510 537 510 537 0.82 7 21 5e-05 0.0043 18.2 3.2 1 23 549 571 549 571 0.97 8 21 1.7e-05 0.0015 19.7 0.2 2 23 611 632 610 632 0.93 9 21 0.07 6 8.3 1.0 1 20 638 657 638 659 0.92 10 21 0.0059 0.5 11.7 0.5 1 17 666 682 666 683 0.93 11 21 0.036 3.1 9.3 3.1 3 23 846 864 844 864 0.95 12 21 1.7e-06 0.00015 22.9 1.1 3 23 872 892 871 892 0.97 13 21 0.00011 0.0091 17.2 1.1 2 23 899 920 898 920 0.97 14 21 0.00027 0.023 16.0 3.3 2 23 926 947 925 948 0.95 15 21 4.4 3.8e+02 2.7 0.4 1 23 953 980 953 980 0.82 16 21 5e-05 0.0043 18.2 3.2 1 23 992 1014 992 1014 0.97 17 21 2.5e-05 0.0022 19.2 0.7 2 23 1054 1075 1053 1075 0.93 18 21 0.072 6.2 8.3 0.9 1 20 1081 1100 1081 1102 0.92 19 21 4.9e-05 0.0042 18.3 4.5 1 23 1109 1131 1109 1131 0.98 20 21 4.4e-05 0.0037 18.4 0.6 1 23 1137 1159 1137 1159 0.98 21 21 2.4e-05 0.0021 19.2 0.5 1 23 1165 1188 1165 1188 0.97
Sequence Information
- Coding Sequence
- ATGATCTGTGCTTTAGATTCAAAAAACGCTACTCTTCTAGGTGCTGTTACAGAACAGCAAAGTAATGATAATGATCCACTTCAGGCAGACACCTCCAGTGGAAACGGTCATAGAGAAAAGGATTTGGTAATACCAACAAATACTCGATTAGTGCCATCCAACAacaaatcagataatattgaatTGAAACAAAATTCCACTCCTGAGTATGACATCGATAGTGTAGATTTAACTGGCCCAAACATGGAGAAGAAAAGTGAAGATTATCATACCGATATCAACGTGAGTGTCAACGCTGCGAAAATGATTTTAGAAGAAGATTTTGGCAGTATTTGTCGCATATGCCTTAAGAAATGTATTCACATGAGGCTTATAACGCATGTCGAGGATAAAGTGCCCGGAAAGCTTCCTTTGATCGAGTTGATTAAGCGTTGTGCGTCAGTGAAGGTAGAGGAAGGCGATGGCTTACCGCAACAAGTTTGCGTGAAATGTATATTGCAGATGAAGAAACGCCTTCTTCTCGAGCAGTTGATAATACATTCTGATGCAGCTTTACGAGGTGTTTTGAAATCAAAACAGTTACATCGGACCAAAGTGAATACTAATGAAACTGAAAAGAAAGAGCAACAGACATATTACTGTAGATACTGTGCCAGAACGTTTGTTACCAATCGATTGTTCCATTTACATTTTTCTCAGACACATCCGAACAAATGCAGTCAGACATATCTTAAGAACTTATTTCATTGTGAAAAAGAAGCCAAGGACACATATTCGTCCATACCACAAGTTGTGGAAGAGATTCCGGAACTTATTATAGCCCAGAAAACCTTGGAAATCCAGAATGCAAACCAACTGCAACCAGAAGTGCAGCCCAAGGATATATCTTCTCTTAAAGAACAAATTGTGGAAAAGAATACTTTAGGAGCCCAGAATCAAAAACTCCAATCAGAAGACCACCCTGCGAGTACAGGGATGGTGGAAGACAACCATCAGATTAGCACTACCAGGAGTACCCCAGAAACCCAATGTAACAACAAAGAACCCAAAAACTTTGGATTTCTTGATATTTGGAAGCAGATCCAAAAAGAAGCGTCCTCCAAACGCAAGCAATACAAAAAGAAAAGAAGGAGGAAGATCAGCCCAGAACCTGAGGAACAGAACTCCAATGAAAACAAGACCACTCGAAAGCAGAAACCGAAAAGCTGCAATATTTGCGGCAAGAAGTTAACATCTAGCTTACAAACTCACATGCGTATTCACACTGGCGAGCGACCTAACATGTGCCACATATGCGGTAGAACATTCATTCAGCTCTCGGGTCTTCGGCTGCATCAGGCAACTCACAGCAATGTTAAAAATTTGGTGTGCGAAGTCTGTGGTAAAAGATTTGCGTGCAGGCAAAATCTACGCGTCCACATGGAAACGCACATGAGTCCAACGCTCAAGTGCCCCCAGTGCCCGACAACATTCACCACAAACAAAAAATTGGATGTGCATTTTCGTAGCCATCATAATGGTGAACTCTTTAAGTGCCCTTTCGACGAGTGTAAAAGCTTCCCTGGATACACACTAAAGAGAAACTTAAACGTTCACATACAATTACAACACGCAGATGCTGATACTGTTGAACCTCACCTACCGTACCATTGTACTTTATGCCCTCGTTCGTTTTCCCAACAATACCACTTAGATATTCATATAAAAGCTCATCTCAGAGACATAAGTAAAGATGAAGATCGAATTGTGAAACCTCGAGTTGTGAAATGTCCCGTTGTTCATAGAAGAAGATACGAAGTGAAAAACAATATTAGAATACTTGAACACCTGGAGTGTAAAGAATGCGGAAAAGTTTTTAAAACTCGTGTTGCCTTAAGAGCGCATTCTGTGCGTCACGGAGAGTCACGTCCTTTTGCGTGCGATTGTTGCAATAGGAACTTTAGCAGTGAAGAGAAATTGAAGGCCCACATTGAGTTTAAGCGGAAACCAAAGCGACACGAGTGCCCCACTTGCCACAAGCGGTTTCAAGATAAGAGCGCATTAAGGACATATCTTACAAACTTGCTCCATTGTGAAAAAGATTCAGAGGAAGCATTTTCGCTCATACCGCAAGTCGTGGAAGAGATTCCGGAACTTATTGTACCCCAGGAAACCTTGGAACACCAGAATGCACACCAACTGCAACTGGTAGTGCAGCCCAAGGATATATCGCCTGTTAAAGAACAAATTGTGGAAAAGAACACTTTTGGAGGCCAGAATAAAGACCAAAACCTCCAATCAGAAGAGCACCCCGAGAGTACAGGGATAGTGGAAGACAACCATCAGATTAGTACTACCAAGAGTACCCCAGAAACCCAGTTTAACGACAAAAAACCCAAAAATCATGGATTTCTTGCTATTTGGAAGCAGATCCAAAAAGAAGCATCCTCGAAACGCAAGAAATACAACAAGCAAAGAAGGAGGAAAATTAGCCTAGAACCTGAGGAGCAGAACTCCGATAAAAGCAAGACCACTCAAAAGCCAAAACCGAAATGCTGCAAAATTTGTGGCAAGGAGTTATCATCTAGTTTAAAAACTCACATGCGTATCCACAGTGGCGAGAAACCTAACATGTGTCACATTTGCGGTAGAACTTTCATTCAGCTCTCAGGTCTTCAGCGGCATCAGGCAACGCACAGCAATGTTAAAAATTTGGTGTGCGAAGTCTGTGGTAAAAGATTTGCATGCAGGAAAAATCTAAATGTCCACATGGAAACGCACATGACACCATCGCTCAAGTGCCCCCAGTGCCCGACAACATtcacaacgaaaaaaaaattggatgtgCATTTTCGCAGCCATCATAATGGTGAACTCTTTAAGTGCCCTTTCGACGAGTGTAAAAACTTCCCTGGATACACATTAAAGAGAAACTTAAACGTTCACATACAATTGCAACATACAGATGCTGATACTGTTGAACCTCACCTACCGTACCATTGTACTCTATGCCCTCGTTCGTTTTCCCAACAATACCACTTAGATATTCATATAAAAGCTCATCTCAGAGACATAAATAAAGATGAGGATAGAATTGTGAAACCTCGAAGTGTGAAGTGTCCTGTTGTTCATAGAAAACGATACGAAGCGAAAAACAATATTAGAATACTTGAACACCAGGAATGTAAAGAATGCGGGAAAGTTTTTAAAACTCGTTTTGCTTTAAAAGCGCATTCTGTGCGTCACGGGGCGTCACGTCCTTTTGCGTGCGATTGTTGCAATAGGAATTTTAGCAGTGAAGAGAAATTGAGGGCCCACATTGAGTTTAAGCGGAAACCAAAGCGACACGAGTGCCCCACTTGCCACAAGCGGTTTCAAGATAAGAGCGCATTAAGGGTACATAATCGGACACATACAGGAGAAAGGCCGTATGAATGCTCGATCTGCCAACGTAGGTTTACTGTAAAGAGGGCATTGGAAACTCATTTGAATCTCCATAATAAGATTTTCCCGTTTGAGTGCAATTTCTGTGATAAAAAATATCCAAACAGGGGTTGGTTAAATACGCACATGCTGATAACTCATAATTTTGGATaa
- Protein Sequence
- MICALDSKNATLLGAVTEQQSNDNDPLQADTSSGNGHREKDLVIPTNTRLVPSNNKSDNIELKQNSTPEYDIDSVDLTGPNMEKKSEDYHTDINVSVNAAKMILEEDFGSICRICLKKCIHMRLITHVEDKVPGKLPLIELIKRCASVKVEEGDGLPQQVCVKCILQMKKRLLLEQLIIHSDAALRGVLKSKQLHRTKVNTNETEKKEQQTYYCRYCARTFVTNRLFHLHFSQTHPNKCSQTYLKNLFHCEKEAKDTYSSIPQVVEEIPELIIAQKTLEIQNANQLQPEVQPKDISSLKEQIVEKNTLGAQNQKLQSEDHPASTGMVEDNHQISTTRSTPETQCNNKEPKNFGFLDIWKQIQKEASSKRKQYKKKRRRKISPEPEEQNSNENKTTRKQKPKSCNICGKKLTSSLQTHMRIHTGERPNMCHICGRTFIQLSGLRLHQATHSNVKNLVCEVCGKRFACRQNLRVHMETHMSPTLKCPQCPTTFTTNKKLDVHFRSHHNGELFKCPFDECKSFPGYTLKRNLNVHIQLQHADADTVEPHLPYHCTLCPRSFSQQYHLDIHIKAHLRDISKDEDRIVKPRVVKCPVVHRRRYEVKNNIRILEHLECKECGKVFKTRVALRAHSVRHGESRPFACDCCNRNFSSEEKLKAHIEFKRKPKRHECPTCHKRFQDKSALRTYLTNLLHCEKDSEEAFSLIPQVVEEIPELIVPQETLEHQNAHQLQLVVQPKDISPVKEQIVEKNTFGGQNKDQNLQSEEHPESTGIVEDNHQISTTKSTPETQFNDKKPKNHGFLAIWKQIQKEASSKRKKYNKQRRRKISLEPEEQNSDKSKTTQKPKPKCCKICGKELSSSLKTHMRIHSGEKPNMCHICGRTFIQLSGLQRHQATHSNVKNLVCEVCGKRFACRKNLNVHMETHMTPSLKCPQCPTTFTTKKKLDVHFRSHHNGELFKCPFDECKNFPGYTLKRNLNVHIQLQHTDADTVEPHLPYHCTLCPRSFSQQYHLDIHIKAHLRDINKDEDRIVKPRSVKCPVVHRKRYEAKNNIRILEHQECKECGKVFKTRFALKAHSVRHGASRPFACDCCNRNFSSEEKLRAHIEFKRKPKRHECPTCHKRFQDKSALRVHNRTHTGERPYECSICQRRFTVKRALETHLNLHNKIFPFECNFCDKKYPNRGWLNTHMLITHNFG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -