Agra018588.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- -
- Assembly
- GCA_963971325.1
- Location
- OZ020225.1:4013605-4021930[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.6e-06 0.00022 22.3 0.1 1 23 195 217 195 217 0.97 2 12 0.0015 0.13 13.6 0.5 1 23 223 245 223 245 0.97 3 12 7e-06 0.0006 20.9 4.3 1 23 251 273 251 273 0.98 4 12 0.00019 0.016 16.4 1.4 3 23 287 307 285 307 0.95 5 12 8.4e-05 0.0072 17.5 0.9 1 23 313 335 313 335 0.98 6 12 7.2e-07 6.2e-05 24.1 3.4 1 23 341 363 341 363 0.97 7 12 1.4e-05 0.0012 20.0 0.0 1 23 369 391 369 391 0.96 8 12 1.7e-05 0.0015 19.7 0.3 1 23 397 419 397 419 0.98 9 12 3.6e-06 0.00031 21.8 0.5 1 23 425 447 425 447 0.98 10 12 3.4e-07 3e-05 25.1 3.0 1 23 453 475 453 475 0.97 11 12 4.4e-07 3.8e-05 24.7 0.3 3 23 483 503 482 503 0.98 12 12 5.1e-06 0.00044 21.4 0.6 1 23 508 530 508 530 0.98
Sequence Information
- Coding Sequence
- ATGGATATGAGCGTTTACTTGACAGCGCCCCTACAGATGGAGAAGATATGTAGGGCGTGCTTATCCGAAAAGGGCGATATGCGGCCGCTGTTCGGTGCATGCTTGGACGAAATGCTCGTTTCGTTTGCTTCTGTACAGGTACAAGAAGGCGATGGCTTGCCAAACCTCATGTGCGTCCAATGCGTACTACAATGTAGCAGAGCGTACACCTTCAAGCAACTCTGTGAGAAATCCGAAAATGTCTTAAGACAATACACCAGTCCAGAGTTTCAGAAAGTCCTGAGACAGCACATGGTCGACCAAACAAAAGCCGAACTACAAGAACAACTGCAATTCAGCGACGACCCAATCGAACAAGTGATAGAAATCCCTGGCTTTATCTCAGCAGACTACACCGATGAACCAGTCGTAACATTACTGGAAGTGAAAGACAGGGACGGAAACCTTACGGAATTAACCGATTCTGAGATAACACTCCTAAAGGCAGAACCAATCGAGGAGACAATCATCGCGCCACAAACTGAAGAAGACGAAATTCAAAATTACGTCGAAACCAATAATCAACAGCCGATAAGTTTAAAATACTCATGCCCCAAGTGTGATGAATCATTCTCTTTAAAAGTGGACCTAAAAGTCCACATGTTAGCCCATCCTAAAGATCTCAATCACGTGTGCAACGTTTGCAGTAAGGCCTTTCCCGAAGCCAGAATTTTGAAGCGCCATCTGAAGATCCACATGGAGAAGAAGCCCCACAAGTGCGACCAATGCGATAAGACGTTCGCAGAGAGTTCAAATTTGAGCAAACACAAGAAGAAACACACCGGAGAACTTCGGAATATCAAGGGAAAACCGCATTTGTGTTCTGTGTGTGGACGAGCCTTCAAATGGGCTTCGAGTTTGTCGAAGCATATGAAGTACCACACTGGGCATAAACTGTTCTCCTGTCAGTATTGCAGTAAACAGTATGTGGAGGCTAGAAGTTTGAGGATACACATCAGGTCGCATACTGGGGAGCGTCCACACGTCTGTGAAGTTTGCAATAAGAGTTTCACGCAGCTCTGCAACTTGGAGAAGCATATTAGGGTCCACACGGGGGAAAAACCGTACTTATGCCCCGTCTGTGGAAAAGGATTCTCGCAGTCGGGATACGTCGGCATCCATATGCGCATACATACCGGGGAGCGACCGTATGTGTGTCAGACGTGCGGTAAGGCCTTTGCAGGTCACAACACGCTAGCGATTCACCAACGGATTCACACAGGGGAAAAACCGTACAGCTGCAGTATCTGCGATAAGAGTTTCGGTAGACAAGAGACGTTGGTGATCCACTCTAGGTCCCACACAGGCTACAAACCACACATCTGCAGCATGTGCAATAAGGCGTTTAGTAGTTCAGGCCATCTATCGGCACACATGCGCACTCACACCGGTGAAAAACCACACGGTTGTAATGTTTGTGGGAAACGGTTTGCTAGTCCAAGTAGTTTGAAAACGCACATGAAGGGTCACATTGTGGATAAACACGTCTGCAAGTTGTGTAATAAAGCGTTTCCGCTGCAGAGTGCGCTACAGCAGCATATTCTTACGCATACTGTTATCACTAAACCAAAACTACCCAAAGTGGACACTGTGCAAGTGGCAGAATTTACGTAA
- Protein Sequence
- MDMSVYLTAPLQMEKICRACLSEKGDMRPLFGACLDEMLVSFASVQVQEGDGLPNLMCVQCVLQCSRAYTFKQLCEKSENVLRQYTSPEFQKVLRQHMVDQTKAELQEQLQFSDDPIEQVIEIPGFISADYTDEPVVTLLEVKDRDGNLTELTDSEITLLKAEPIEETIIAPQTEEDEIQNYVETNNQQPISLKYSCPKCDESFSLKVDLKVHMLAHPKDLNHVCNVCSKAFPEARILKRHLKIHMEKKPHKCDQCDKTFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLFSCQYCSKQYVEARSLRIHIRSHTGERPHVCEVCNKSFTQLCNLEKHIRVHTGEKPYLCPVCGKGFSQSGYVGIHMRIHTGERPYVCQTCGKAFAGHNTLAIHQRIHTGEKPYSCSICDKSFGRQETLVIHSRSHTGYKPHICSMCNKAFSSSGHLSAHMRTHTGEKPHGCNVCGKRFASPSSLKTHMKGHIVDKHVCKLCNKAFPLQSALQQHILTHTVITKPKLPKVDTVQVAEFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00981459;
- 90% Identity
- iTF_00138322; iTF_00981459;
- 80% Identity
- -