Agra014708.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius granarius
Gene Symbol
Zfa
Assembly
GCA_963971325.1
Location
OZ020224.1:9156512-9171703[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 5e-05 0.0043 18.2 1.3 1 23 8 30 8 30 0.97
2 19 0.043 3.7 9.0 7.1 1 23 38 60 38 60 0.98
3 19 0.25 21 6.6 0.2 1 23 66 88 66 88 0.98
4 19 0.00013 0.011 16.9 0.5 1 23 94 116 94 116 0.99
5 19 0.00085 0.073 14.4 4.2 1 23 122 144 122 144 0.99
6 19 0.00064 0.055 14.8 0.4 1 23 150 172 150 172 0.96
7 19 0.00015 0.013 16.8 0.4 1 23 198 220 198 220 0.98
8 19 0.00028 0.024 15.9 0.2 1 23 522 544 522 544 0.97
9 19 0.0028 0.24 12.8 0.2 3 23 551 570 549 570 0.97
10 19 0.0014 0.12 13.7 5.0 1 23 576 598 576 598 0.98
11 19 4.2e-05 0.0036 18.5 0.2 1 23 604 626 604 626 0.99
12 19 5.4e-07 4.6e-05 24.4 1.4 1 23 633 655 633 655 0.98
13 19 0.0069 0.59 11.5 0.9 1 23 661 683 661 683 0.98
14 19 0.0015 0.13 13.6 0.2 1 23 689 711 689 711 0.99
15 19 0.00014 0.012 16.8 0.6 1 23 717 739 717 739 0.98
16 19 0.0017 0.15 13.4 0.5 1 23 745 767 745 767 0.98
17 19 0.019 1.6 10.2 2.9 1 23 773 795 773 795 0.99
18 19 0.00044 0.038 15.3 0.1 1 23 801 823 801 823 0.99
19 19 0.00046 0.04 15.2 2.0 1 23 829 852 829 852 0.97

Sequence Information

Coding Sequence
ATGCATACGGAAGAAAAACAATTTAAATGTATTATATGCAACCGCGCTTTTACACGTCGTTTGAATTTAGCACAGCATATGAAGAGGCATAACGGGGATATACCCAAGAAACATAAATGCAATTTGTGCGATTATGCATCGACGAGCAGCCACGGCCTTAAATGCCACATGAGGACGCATACTGGCGAGAAACCGTTTAAGTGTGCGCTTTGTAGCTATGCTAGTGCATCTAAAGACATTGTCAAAAATCATATGATAACACATACCCGGGAAAAACGATTCAAGTGTACGGTTTGCGATCAAGCTTTTGCATGGAGAAGCAGTGTGAAAAGACATATGAAAATTCACACAGGCGAGAAACCCTTTAAATGTACCATATGTACATATGTCACTGCGCATCGTTATTATTACGTACAGCATATGAGACGGCATACTGGAGAAAAGCCATTTTTATGCAGCATATGTGGCTATGCTTCTGTTAAGGCTCAGATGTTGAAGTACCACATGAGAAGGCATACAAACGAgggtaaaaaaagaaaaattcgttCCAGTCCCAAAAATCCGGAAATTAGCAGAAATTTAGAGAAGAGTTTTAAATGCTCTATTTGTTACTATGCTACAGCGTATCCTAATAATCTCAGACTACATATGAGAGGACATGCGGAACGtgcTAACTTCAGGCCCAGAATATCAATGTGCATTGTGCCATGTTGCCAGAACAAAGGCAGAATCCCCGGCGTGAAGTATTTTAGgaTAACAAAAAACCGAATCCCCACTTGGTCAAGAGCGCTCAATAGAAATATTAATGAGACTGCCAGTTATGGTGGTGGCGTATGTTCCTTGCATTTTACTGCCAATGATTTTTACGGAAACTGCGGATCGCTGAAACAGTATGCTGTACCATCTGTGATGCTGTCTCCTACCACTACAAatgaacatgttgaactattTTCTATTGAcgGCAACTGTGGTGTTGTTAGCGTTTCTAAAAAGGAACTTAATCCTTCAATTGAGAAAAGTGCACCGGAAATTGAAGGCGATTTACAATGTGGCCTAACAATAAATGGCATTAATGAACCCAGTAACAGTTACCATTTATTTGAAGATGATACCGAGGGAGCACTAATTATTCTGGACCAAGTTCCACCTCTTACTAAGGAAAGTCCACAAACAGATGCaagGTTTGACTGTATTGTGGAACGCAACGCTGAAAATCCAGCTAGTACTTTGATCCAAGTTCCGTCTGCAGCTGAAGATAATGCACAAATTGAATTAAGTTCCCAACCCATGGAGGATTTCAATATTGAAACAGGTGAGAATATTTTGGAAGAAATGTATTCTGCTCCTGAAGAATGTCCAGAAATAGATGCAAGCTATGACCTAGAAGAACTCATCCAATTCACTGTTCTGGCATCGACAGATCCGGAACAACCTCTCAAACGTTTAAAGGCAAAAACACCAGACGAAACATCGAGCAAGTGCAACCAACAAAATGACCTAACAAGACTGCTTGAAGAGCATTCATACTCAAAATCATCTGAACACAACAATGAAACGAAAACATTTAACTGTAcagtttgcaattattcaacaaCCACCTCAGGAGAATTGGAAACTCACGTGGCAATGCATCAAAAACAAAAAGTTATATGCGAGTTATGTGGTATAACCCTTAAGAAAGGGTCCCTGAAGGATCATATGAGAACCCATACAGGGGAACGCCCCCATAAATGTCCTCAGTGTGACTATGCAAGCACAAAATCATGCGACCTAAAACGTCACTTGACGACACACACAGAAGACAAGCCTTATAAGTGTACTGAATGTGATTATGCCGGCGCATATAAAGCTAGTCTTACAATGCATATGAGGGTGCACGCAGCCAGGCCAAAGACGTTTAAGTGCAACATTTGCCCTTGCGCTTTTGCCGACAGCAGTACGCTTAAGAGACATATCCGTCTGCATACCGGCGAGAAATCATTCAAATGCTCCCTTTGTGACTATGCCACTTTATTTAAAGCTAACCTTTCCGTGCATATGAAACGGCACTCCGGattaaaaccatttaagtgcacagtTTGTGAGTATGGAGCCATCACTGCGCAGAAGCTGAGAGAGCATATGATGACGCATACCGGAGATAGACCATTTAAATGCAGCATATGCAACTTTTCAGCGTCTCGGCCTGTGACTTTGAGGATTCATATGACAAAACACAGCAGAGAGAAGCCTTATAACTGCGAAGTTTGTAACTATAGTGGTGCAACTAGCCGTCGTCTTGCGCAACACATGAAGAGACATACGGGAGATAGGCATTTTAAATGCAGCGTATGTGATTTTGTTACTCATCGCCGTAATATTTTAACAGTTCATATGAGAAAGCACACCGAAGAAAAACCATATAAGTGCAATGTATGTGACTACGCTGGTGCTCAAACGGGTACTCTCGCTCAGCATATGAAAATACATACGGGGGATAAACCATTTACATGTAGCAGTTGTAATTATTCCTCCAACCGACGTTCTCAGTTAGTAAGGCATACAAAAGTAATGCACAAGGCGAAGCAACAATAG
Protein Sequence
MHTEEKQFKCIICNRAFTRRLNLAQHMKRHNGDIPKKHKCNLCDYASTSSHGLKCHMRTHTGEKPFKCALCSYASASKDIVKNHMITHTREKRFKCTVCDQAFAWRSSVKRHMKIHTGEKPFKCTICTYVTAHRYYYVQHMRRHTGEKPFLCSICGYASVKAQMLKYHMRRHTNEGKKRKIRSSPKNPEISRNLEKSFKCSICYYATAYPNNLRLHMRGHAERANFRPRISMCIVPCCQNKGRIPGVKYFRITKNRIPTWSRALNRNINETASYGGGVCSLHFTANDFYGNCGSLKQYAVPSVMLSPTTTNEHVELFSIDGNCGVVSVSKKELNPSIEKSAPEIEGDLQCGLTINGINEPSNSYHLFEDDTEGALIILDQVPPLTKESPQTDARFDCIVERNAENPASTLIQVPSAAEDNAQIELSSQPMEDFNIETGENILEEMYSAPEECPEIDASYDLEELIQFTVLASTDPEQPLKRLKAKTPDETSSKCNQQNDLTRLLEEHSYSKSSEHNNETKTFNCTVCNYSTTTSGELETHVAMHQKQKVICELCGITLKKGSLKDHMRTHTGERPHKCPQCDYASTKSCDLKRHLTTHTEDKPYKCTECDYAGAYKASLTMHMRVHAARPKTFKCNICPCAFADSSTLKRHIRLHTGEKSFKCSLCDYATLFKANLSVHMKRHSGLKPFKCTVCEYGAITAQKLREHMMTHTGDRPFKCSICNFSASRPVTLRIHMTKHSREKPYNCEVCNYSGATSRRLAQHMKRHTGDRHFKCSVCDFVTHRRNILTVHMRKHTEEKPYKCNVCDYAGAQTGTLAQHMKIHTGDKPFTCSSCNYSSNRRSQLVRHTKVMHKAKQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00137211;
90% Identity
-
80% Identity
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