Agra023659.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius granarius
Gene Symbol
ZNF296
Assembly
GCA_963971325.1
Location
OZ020227.1:1572845-1574928[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 4.9e-05 0.0042 18.3 3.0 1 23 166 188 166 189 0.95
2 17 0.0066 0.56 11.6 1.2 1 23 197 220 197 220 0.95
3 17 0.0013 0.11 13.8 3.3 1 23 225 248 225 248 0.97
4 17 1.9e-05 0.0017 19.5 0.5 1 23 261 284 261 284 0.98
5 17 0.00078 0.067 14.5 0.5 1 23 298 321 298 321 0.96
6 17 0.0096 0.82 11.1 1.9 3 20 331 348 330 350 0.93
7 17 0.00046 0.039 15.2 0.2 1 23 356 379 356 379 0.94
8 17 0.00081 0.069 14.5 1.7 1 23 386 409 386 409 0.95
9 17 2.5e-06 0.00022 22.3 0.7 1 23 419 441 419 441 0.99
10 17 0.0074 0.64 11.4 1.4 1 23 447 470 447 470 0.93
11 17 0.0038 0.33 12.3 0.2 1 23 479 502 479 502 0.92
12 17 0.00011 0.0091 17.2 0.6 2 23 508 529 507 529 0.96
13 17 6e-06 0.00051 21.2 0.4 1 23 535 558 535 558 0.97
14 17 0.00069 0.059 14.7 2.2 1 23 564 587 564 587 0.97
15 17 0.00045 0.039 15.3 0.6 1 23 596 618 596 618 0.97
16 17 8.3e-07 7.1e-05 23.9 1.3 1 23 624 646 624 646 0.98
17 17 4.8e-06 0.00042 21.4 2.9 1 23 651 673 651 673 0.99

Sequence Information

Coding Sequence
ATGTCTGTTTGTCGATTTTGTTTAAAATCATCACCCGAAGATTTCTGCAGGAAAATAACAAGCATAGATGACAAACAATTTAAGCTGATACTCCCAGACATTGACTTGAGCTTGACAGAATCACCCGTAATATGTGATCTGTGCGTAAGATTACTAGACGAAGCTTACACTTTTAAATCATGCTGTCTACAATCCGAAAAAGTTATAAACAACTACAGAGAAGTACACGGTTGCATTAACTTAATCGAAATACACAAAACCACCAATTTTGATGAAGAAAATCATTTACTTATTGGAGAATCACTTGTGAAAACTGAACTTGGAGATAATAATACAAATAACTCAAATTGCGATGATTTCAATGCATCTACGGATGAAGAATGTAGTGGTGAgggtttaaaaaatataaatgtggATATTAAAGATgaagatttaattaataaagctTCTGGGAGTACCAAAAGCTTAAATCAACAGAGCatatcagaaaaaaaatttaattgcttGGTATGCAATAAAGAATTTGCAGTACGTCGATATCTAACTAATCACATGAGACGGCATCATCCTCAGGATGAAAAACTAAAGTTTCAATGTAAATTGTGCGGAAAGGGCTTTATCCTAGCTTGCATACTTAAAAAGCATCAGCAAGAAGTCCACGGTGAAAAAAAATTCCAATGCGATCACTGCTCATTAAAATTTTCAGCCAGGAGGTATCTAGAAAAACACATTGATAGAAAACATACAACATTTGACGAAAATGATTCAGAACAAACAAAATATAAGTGCGATAAATGCGCCAACACTTTCACAGACCAAACTTCTTTACAAGCTCACATTAATTCAGAACATGAAGTACGAAAAAACGATGTAAAGAGGCAAAAATTGGAATTTAATTGTCCAGTTTGTGACAGTGTTTTCGTCTCGCTGAACTGCCTGCAGATTCACATAAAAGAACAACACGATAATTCCTCCGTGGTACTAAATTGTTGTAAACATTGCGCGAAGCAATTTGAAACTTCAAAAGAACTGAGGGAACACTTAGCGGTATGCAAAGAGAAGCAATACGCATGCGCAACATGCGGGAGACGCTTCGAATACAATTATAAACTCGTCGCGCACATAACCCAAATTCATTCGCCGGATACCCGCAAACACGCTTGCCAAACTTGTGGAATTACATAcagaaataaaactatgttggacaGTCATATTCAAAAGCAACATTTAGGCATTCGCCGATCACGCACACGATATACGTGCGACGTTTGCAACAGAAGTTTTACAAAACCGATAGCACTGCAACGGCATAAATTGACGCACGAAGTTCATACGGATTTTCTGTGCCCCGTTTGCGAGAGAGGTTTCAAATCGAAATTTTTTATGCATCAGCATATAAACGAGGTCCATTATGACAGACGAGAATTGACTAAATACATATGTCGGCATTGCGACGCGGAATTTGAGAAAGCAGGCGATTTGAACGCCCACAAATCCGAGGTGCATACGGAATTACGGTGTGCGTGTGAAGTATGCGGCATTACAACTTCGAAAAAGTCCCAGATGGTTGTTCATATGCGTGTCCATACGGGTGTTAGGCCGTACGCGTGCGACGAATGCGATAAATCTTTTAATCAAAGTAATTCTTTGGTGCTTCATAAACGGTCTGTACACAGCAATGAAAGACCTTATTCGTGTACTTATTGTCATAGTAGGTTTGCGTTAAAAGGTACGTTAACGAAGCATATCGAACGTGTTCACTTAAAGGACAAATTGGAGAAGAAATTTACTTGCACCGTTTGCTCTAAGAAGTTTTTGAGAAAACCGCAACTCTCGGCGCATATGATATGGCATAGCGGGGAACGCAACCACAAGTGTGACGTTTGCGGCAAGACGTTTGTAAGCAGAGGCACGTTGAGCAGACACCAACTCATACATGCTGAGAAAAAGTATGAATGCCAGATATGCTTGAAGAAATTCCATCAGAGATCCAATCTAACTATTCATATGAAAGTACATAAGAAGACATAA
Protein Sequence
MSVCRFCLKSSPEDFCRKITSIDDKQFKLILPDIDLSLTESPVICDLCVRLLDEAYTFKSCCLQSEKVINNYREVHGCINLIEIHKTTNFDEENHLLIGESLVKTELGDNNTNNSNCDDFNASTDEECSGEGLKNINVDIKDEDLINKASGSTKSLNQQSISEKKFNCLVCNKEFAVRRYLTNHMRRHHPQDEKLKFQCKLCGKGFILACILKKHQQEVHGEKKFQCDHCSLKFSARRYLEKHIDRKHTTFDENDSEQTKYKCDKCANTFTDQTSLQAHINSEHEVRKNDVKRQKLEFNCPVCDSVFVSLNCLQIHIKEQHDNSSVVLNCCKHCAKQFETSKELREHLAVCKEKQYACATCGRRFEYNYKLVAHITQIHSPDTRKHACQTCGITYRNKTMLDSHIQKQHLGIRRSRTRYTCDVCNRSFTKPIALQRHKLTHEVHTDFLCPVCERGFKSKFFMHQHINEVHYDRRELTKYICRHCDAEFEKAGDLNAHKSEVHTELRCACEVCGITTSKKSQMVVHMRVHTGVRPYACDECDKSFNQSNSLVLHKRSVHSNERPYSCTYCHSRFALKGTLTKHIERVHLKDKLEKKFTCTVCSKKFLRKPQLSAHMIWHSGERNHKCDVCGKTFVSRGTLSRHQLIHAEKKYECQICLKKFHQRSNLTIHMKVHKKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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