Agra014025.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius granarius
Gene Symbol
-
Assembly
GCA_963971325.1
Location
OZ020224.1:3970005-3974041[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 1.9e-05 0.0016 19.6 2.8 1 23 172 194 172 194 0.99
2 21 5.9e-06 0.00051 21.2 0.8 1 23 200 222 200 222 0.99
3 21 0.00032 0.028 15.7 1.4 1 23 228 250 228 250 0.99
4 21 0.0021 0.18 13.1 4.7 1 23 280 302 280 302 0.98
5 21 0.0024 0.21 13.0 2.9 1 23 308 330 308 330 0.98
6 21 0.0025 0.21 12.9 3.4 1 23 336 358 336 358 0.98
7 21 3.3e-05 0.0028 18.8 0.5 1 23 363 385 363 385 0.99
8 21 0.0014 0.12 13.7 5.2 1 23 391 413 391 413 0.98
9 21 0.003 0.26 12.6 4.4 2 23 457 478 456 478 0.97
10 21 0.00096 0.083 14.2 2.9 1 23 484 506 484 506 0.98
11 21 0.00024 0.021 16.1 2.6 1 23 512 534 512 534 0.99
12 21 0.00019 0.016 16.4 1.3 1 23 541 563 541 563 0.99
13 21 0.08 6.9 8.2 1.0 1 23 569 591 569 591 0.97
14 21 0.00053 0.046 15.0 0.4 1 23 597 619 597 619 0.99
15 21 1.9e-05 0.0017 19.6 0.3 2 23 626 647 625 647 0.97
16 21 0.1 8.9 7.8 3.2 1 23 653 676 653 676 0.93
17 21 0.0054 0.46 11.9 3.8 1 23 682 705 682 705 0.96
18 21 0.00033 0.028 15.7 0.0 2 23 716 737 715 737 0.97
19 21 0.00018 0.016 16.5 2.0 1 23 743 765 743 765 0.99
20 21 0.00011 0.0093 17.2 2.9 1 20 774 793 774 797 0.94
21 21 0.019 1.6 10.2 4.4 1 23 803 825 803 826 0.96

Sequence Information

Coding Sequence
ATGGCTTGCTCAGTTCCCGACTGTCGTGTGAATCCTAAAATTTCCTTGGCTATAGGATTAAAAATCTACTATTATGAGTTTCCAAATGATCTTAGTTTGCGTCAGTTATGGATAAAGGAATGTAAAATACCCCCTGAAGTAGACATCGACAAAGCCAGGGTGTGCACTCGTCATTTTAGTGTTGATGATTTTGAAAGACCGCCTCTAAAAGAGAATGTTGTCCCGTCACTCGAATTACCCGAGGATATTGTGGGTAGCCCATCTGAGATCGAAGGAACATCTGAAATTAGTTCTGTGCATTGTAAGGAAAGAGAGGTTGCAATAGATGAGTCAGGTACCGCCAAAAAGTCTAAAGGTGAACCGCCCAAAGAAGATATACAGATCACAGAACTGGATGACGAACACTCACCGTCTTTACCGATACTCGACATCAAAATCGAAGAAGCTGAAATCACCGAAGATGCCGACTACCCATGTGAAACTTCGCTGCTATCTGTCGAGAACTGGGGCAAATATAAATGCTCAATTTGCAACTACGCTTGCACATTTCCAGATCAACTTAAAACTCACATGCTTAAGCATACAAGATCAAAAGACTTCAAATGCTCTACATGCGACTTGGCTTTTGCGACTAGCGTCAAACTGAGCAGACATATCAAAACGCATTGTGGCGAAAGGCCCTTTAAGTGCACCATGTGCGACTACACTACCATGATACGCGCAAATTTCATACGACACATGAATACACACGCCGGCGTTAAACCGATCAAACCCTCCACTTCTACGCCTAGCAGTATTCTAAAGAAATATTTAGAAACAGCAAGCGAAGAAAAACCGTTCAAATGCTCGTTGTGCAACTTCGCTTGCTTGAATCGCTCAAACCTCACAAAACACATGAATAAGCATTCGGACATGATACCGTTCAACTGCTCACTCTGTCACTTCTCTAGCACAACAGCCGCAGACTTTTCCAAACATATGAGTACGCATTCCGATGACAAAACATTCAAATGCCACTTATGTGACTATGCTAGTTCGAGAGAGTTTGACATTAGGAAACATATGTTTACGCACGGCGAGAATACGTTTAAGTGCGATATCTGTGACTATGTTAGTACAACGTGGGCTACGCTGAACGAACATTTCAAAACGCACTCCGATGAGAAACCGTTCAAGTGCTCGTTGTGCGATTTTACTTGCTTCAAGCGGCCAGATCTCAAAAGGCATATGAATAGACATTCGGTTACGAAACCAGACATGACAGATCACACGAAACCGACAGATGACACAAAACCGACAGATGACACAAAACCGACAGATAACACAAAATTGACAGATAACACTACTCCACCGAGCGAGAAGCCGTTGAAATGTTCGTTGTGCGACTTTACTTGCTTGAGTCGCTCCAATCTCACAAAACACATGAATAGACACTCAGGTGCCATACCATTTAACTGCTCCCTGTGCCACTTTGCGTGCGCAAAACCCGCAGAACTCACCAAACATATGAGTACACATTCTGAGGATAACGCGTACAAATGCCGCTTGTGCGACTACGCCACCGTGCGACAGTTTGATTTTAAAAGGCACATGTCGAGGCATGAAAAACGTGAGACAACGTACAAGTGTACCCATTGTGACTATGCTAGTACATCACGCCCGGACATGCGAGAACATATGGCTACGCATCGAGACAGGAAATTATTTAAATGCTCGATGTGTGAGTTTGTTACGCAGTGGCGTTTAAGTCTTGTGCGACACATGAGGACCCACACGGGTGATCGACCGTTTAAATGTTCTTTATGCGATTACGCGGCGAATGAGTCGCAACTGCTTAAAGTGCATATGAGGAGGCACAAAGGCGAAAAGCCAGTACAGTGCGACCAATGCGGTAAACGCTTTGTGCTCTTCGCTCAACTCAAGATACACATGAGGCTACACACTGGCGTGAAGCAGTATAAGTGTAGCATGTGTGATTATGTGGGACGGCAGAGTGGGCATCTTAAATTCCATTTTATGAGGAGGCACTCGAAGGAGAGACCGTGCAAGTGTCCGCATTGTGACTATACTAGTACGCAGGTGGCTACCCTTCGGTATCACGTTATGACGCGGCATTCGGAAAAGGCTGACGCTGAGTTGCCGATCAAGTGTCCCGTGTGTCCGAGACGTGTTGCGTCTGCCAACCGGCTGACGATTCATATGCGAATCCACACGGGGGAGAAGCCGTATAAATGTGGTTTGTGTGATTATGCTGCTGCGCAGAAATGTCAATTGAAAAgtcacatgaggaagcatacgGGGGAGCGACCAGAAGCAGTGCATCAGTGCACGGAATGTGGTAAAAGGTTTACGCGTGTTTCTGTTCTTAAGAGGCACGTTATGTGTGTGCATACGAAGGAGCGGCCGTTTAAATGTTCGAAATGTGATTATGGTACTGTACGACATCCTCGTCTCGTACAGCACATGCAAAAGCATCATACGTAA
Protein Sequence
MACSVPDCRVNPKISLAIGLKIYYYEFPNDLSLRQLWIKECKIPPEVDIDKARVCTRHFSVDDFERPPLKENVVPSLELPEDIVGSPSEIEGTSEISSVHCKEREVAIDESGTAKKSKGEPPKEDIQITELDDEHSPSLPILDIKIEEAEITEDADYPCETSLLSVENWGKYKCSICNYACTFPDQLKTHMLKHTRSKDFKCSTCDLAFATSVKLSRHIKTHCGERPFKCTMCDYTTMIRANFIRHMNTHAGVKPIKPSTSTPSSILKKYLETASEEKPFKCSLCNFACLNRSNLTKHMNKHSDMIPFNCSLCHFSSTTAADFSKHMSTHSDDKTFKCHLCDYASSREFDIRKHMFTHGENTFKCDICDYVSTTWATLNEHFKTHSDEKPFKCSLCDFTCFKRPDLKRHMNRHSVTKPDMTDHTKPTDDTKPTDDTKPTDNTKLTDNTTPPSEKPLKCSLCDFTCLSRSNLTKHMNRHSGAIPFNCSLCHFACAKPAELTKHMSTHSEDNAYKCRLCDYATVRQFDFKRHMSRHEKRETTYKCTHCDYASTSRPDMREHMATHRDRKLFKCSMCEFVTQWRLSLVRHMRTHTGDRPFKCSLCDYAANESQLLKVHMRRHKGEKPVQCDQCGKRFVLFAQLKIHMRLHTGVKQYKCSMCDYVGRQSGHLKFHFMRRHSKERPCKCPHCDYTSTQVATLRYHVMTRHSEKADAELPIKCPVCPRRVASANRLTIHMRIHTGEKPYKCGLCDYAAAQKCQLKSHMRKHTGERPEAVHQCTECGKRFTRVSVLKRHVMCVHTKERPFKCSKCDYGTVRHPRLVQHMQKHHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-