Agra014466.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius granarius
Gene Symbol
-
Assembly
GCA_963971325.1
Location
OZ020224.1:7708763-7717847[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0012 0.1 13.9 3.7 2 23 38 59 37 59 0.97
2 20 0.00011 0.0096 17.2 0.9 1 23 75 97 75 97 0.99
3 20 0.001 0.088 14.1 1.7 1 23 103 126 103 126 0.98
4 20 5.1e-06 0.00044 21.4 3.5 1 23 132 154 132 154 0.99
5 20 0.00015 0.013 16.7 5.2 1 23 160 182 160 182 0.99
6 20 0.009 0.77 11.2 4.0 2 23 189 210 188 210 0.97
7 20 0.0001 0.0089 17.3 1.7 1 23 216 238 216 238 0.99
8 20 2.8e-05 0.0024 19.1 1.3 1 23 244 266 244 266 0.99
9 20 0.00071 0.061 14.6 1.3 1 23 272 294 272 294 0.99
10 20 0.0011 0.09 14.1 8.4 1 23 300 322 300 322 0.99
11 20 0.00021 0.018 16.3 1.8 1 23 328 350 328 350 0.99
12 20 4.2e-06 0.00036 21.6 0.5 1 23 356 378 356 378 0.99
13 20 3.4e-05 0.0029 18.8 0.1 1 23 384 406 384 406 0.99
14 20 0.0001 0.0087 17.3 1.4 1 23 412 434 412 434 0.98
15 20 0.00043 0.037 15.3 1.6 1 23 440 462 440 462 0.98
16 20 5.1 4.3e+02 2.5 0.2 1 9 468 476 468 480 0.87
17 20 0.072 6.2 8.3 1.8 1 23 594 616 594 616 0.98
18 20 0.0022 0.19 13.1 0.2 1 23 622 644 622 644 0.98
19 20 0.00051 0.044 15.1 0.2 1 23 650 672 650 672 0.98
20 20 0.0005 0.043 15.1 3.7 1 23 678 700 678 700 0.99

Sequence Information

Coding Sequence
ATGAATTTCAGAATTGACATCAAGAATGAGATGGAATTCACCGACACCACAATCGTATTATCAGGACAACCACTCAAATGGCTGTTCACCAATACACCGGTGGAACATTTAAAATGTCACCTGTGCGACTATACCACAACACAGGACAGATCCTTAAAGGCACACAAGCGGACACACTCTACAAAGAAATCGAGCAAGAAAATCCCTGCTGGGAAGAAGCAATACAAATGCTCCATATGCCAGTATGCTACTTCAGACCGTGCATACCTGAAAATACACAATCGCACTCACACAGGAGTCAGGCCGTTCAAGTGCACAAAATGCAACTTTTCGTCAGCACAAGCTGGCGACCTTACGACCCACACCAAAAGGAGACACACCAAAGAAAAGCCATTCAAGTGCACCGTATGCGACTATTCTTGTGCTACCAGATACAGCCTCAAGTCCCACATGAGGGTACATTCGAAAGAGAAACCCTTTCGGTGCAACATATGTGATTTTATTTGCTCGCATAGGTCTTCGCTAACGATGCATGTAAGGACTCATACGGGCGAAAAACGCTTAAAATGTACTAAGTGTGATTATGCTTGTATACAGCATATTACCATGATAAGGCATATAAGACGCCATCTTGGAGTTAGGCCGTTTAAGTGTACTGTTTGTTCTTACGCTTCCGTTGAAAGATCTGCTCTTACTCATCATATGCGGACCCACACGAAGGAAAAGCCGTTCAAATGCGACGTTTGTGATTATGCCTGTTCTGTAAAGTCTGCTCTTACGCAGCATACTAGGGTACATACAGGCCAGAAGCCGTACAAATGCTTGGTGTGCGAATTTGCATGTACTGGACGTTCTTCTCTCAAAGGTCACATGAGAATCCATACAGGTGAAAAGCCGTTCAAATGTACCGTTTGCAATTACACTTGCTCTTGTTCATCATCCCTGAAGAAACACATGCGCACGCATTCTGGAGAAAGACCGTTCAAGTGCCCGACGTGTGACTATGCTAGTGCGCGCAGACACGTCCTCACTATGCACATGAAAACACACACCGGTGAGAAGGAATACAAATGTACAACCTGTGACTATGCCACTAGAACCAGTGCCAACCTCGTAGCCCACATCAGAAAGCACACAGGCGAGAAACCATTTAAATGTTCTATATGTGATTATGCTTATGCTACGAAACCCGGCCTTGCCATACATTTGAAAACGCATGCTAGCGACAGGCCATTTAAGTGTACCTTCTGTGACTATGCTTCTACGGTGCGATATTCTCTGACCGCGCATATGAGACAACACACGGGTGAGAAGCCGTATAAGTGCAGCATGTGTGACTATGCTAGTGGACAGAGTTCTTGCTTAAAAATCCACATGGCAAAGCATACGGGCAAGAAGCGATTTAAATGTTCGATTTGCGATTATGCCAGTGCGGAAAAGCAGCCCACCGACTTAATAGTTGAAGAAAATAAGAGGGTTGGGTTATCCAACAATATATATGGTGATAAATGGAATGGAGAAATAAAAACTGAACCGTTTGAACAAATTGATGTCAAAGGTGAAAATTTTGATCATTCCGATTGTACTTCCGACAGGCTTTCTTCTACTGAACAGATTGAGCCTGAAGCAAAAGTACACTGTGAAGAAACCGTAGTGAAGACAGAAAATATTAATGAGTCCCATGATGCTACTCCTACAGAAGATATGGAAACGCATGACCTAGATTGTACTCTTCCGTGGTCCGGCCATTGTATTAAATCCGATAAAAGAAAGAAGACATTTAAGTGCAGTATGTGTGAATATGCTGCTAGATGTGTGAGCGATCTTAATAGACATATGCTAAAACATAGAGGCAAAAAACCTTTCAACTGCAATTTATGCGATTATGCTGCCATGGACGCATCGGATGTTAGACGACACATGCAAAGACATACAGGGCTGATGTCATATATTTGTGATATATGTGGGTACGGTGCCAAATATGCATCTGACTTACTCAGACATAAACAAAAGCATACAAGGGAAAGTGAATATAAATGTAACACATGCGACTATACTACATCAAAGGTACATGATCTTAGAGAGCATCTCAAAACTCATGAGGAGAAGAAACCATATCAGTGCAATATATTTATCACCAGAGCCCTGGCAGAAAAAGGAAACCAGCTACTGAAACCGTACCAAAACATAGAGGGAGAACTGACCCTGTCAAACGGCATCCTTTTGAGGGGTCATCGAATTGTAATCCCAAAACCCCTGCAGcaagaaacaataaaattaacacCAGAACAACAAATAGCAAAGCAAAACACAGGTGAAGAAATCTGTCGGGAATCTGTTGGGAATGCAAACATCGCTGAGGGAACTGGATCAACGGATGTGCTATACACCAGAAGGATTGACCCACCAAACATTCAGAACAACAAAAACTTATCAACCGACAAAACTACAATAACACCTAACGGCGAAGTTCCGAAAGAAGTTGCAGCCGATGATACTGTGAAGTCTTCTTGGAGACCAGGACAAATGAGAACCACAGAGGAAGAAACGGATAACAGCCAGAACAACAAGATCGACGAACGAAGTAGAAAATATAAAGAATACGCCAAAAAGCGAAGAAATACAAAACCCAACAATCTACAAGTAGGAGACGTAGTATTATGTCAACAGAGAAAAACAAACATGCTAACACCACGGTACGACCCACATCCATATACGGTCATAAAGATAGAAGGCACAAAAGTAACGGCAAGAAGAAGAGAAGATACCAGAAACGCATCCTTCTCTAAAAAAGAGACAGTGACCAGAAACGCATCCTTGTTTAAAAACATTCCTAATCCTATTATTCATCCTATCTCCAAAAGAGATTGTAGAATATCAGAACAGGACACAGAGATAGCAGCACCAGCGCCTCCACCCATCTGGGCAAGTCAAATGCGTTATGCAGGTGGTTACTGTATATAA
Protein Sequence
MNFRIDIKNEMEFTDTTIVLSGQPLKWLFTNTPVEHLKCHLCDYTTTQDRSLKAHKRTHSTKKSSKKIPAGKKQYKCSICQYATSDRAYLKIHNRTHTGVRPFKCTKCNFSSAQAGDLTTHTKRRHTKEKPFKCTVCDYSCATRYSLKSHMRVHSKEKPFRCNICDFICSHRSSLTMHVRTHTGEKRLKCTKCDYACIQHITMIRHIRRHLGVRPFKCTVCSYASVERSALTHHMRTHTKEKPFKCDVCDYACSVKSALTQHTRVHTGQKPYKCLVCEFACTGRSSLKGHMRIHTGEKPFKCTVCNYTCSCSSSLKKHMRTHSGERPFKCPTCDYASARRHVLTMHMKTHTGEKEYKCTTCDYATRTSANLVAHIRKHTGEKPFKCSICDYAYATKPGLAIHLKTHASDRPFKCTFCDYASTVRYSLTAHMRQHTGEKPYKCSMCDYASGQSSCLKIHMAKHTGKKRFKCSICDYASAEKQPTDLIVEENKRVGLSNNIYGDKWNGEIKTEPFEQIDVKGENFDHSDCTSDRLSSTEQIEPEAKVHCEETVVKTENINESHDATPTEDMETHDLDCTLPWSGHCIKSDKRKKTFKCSMCEYAARCVSDLNRHMLKHRGKKPFNCNLCDYAAMDASDVRRHMQRHTGLMSYICDICGYGAKYASDLLRHKQKHTRESEYKCNTCDYTTSKVHDLREHLKTHEEKKPYQCNIFITRALAEKGNQLLKPYQNIEGELTLSNGILLRGHRIVIPKPLQQETIKLTPEQQIAKQNTGEEICRESVGNANIAEGTGSTDVLYTRRIDPPNIQNNKNLSTDKTTITPNGEVPKEVAADDTVKSSWRPGQMRTTEEETDNSQNNKIDERSRKYKEYAKKRRNTKPNNLQVGDVVLCQQRKTNMLTPRYDPHPYTVIKIEGTKVTARRREDTRNASFSKKETVTRNASLFKNIPNPIIHPISKRDCRISEQDTEIAAPAPPPIWASQMRYAGGYCI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-