Basic Information

Insect: Aphodius granarius
Gene Symbol: -
Assembly: GCA_963971325.1
Location: OZ020225.1:2972089-2974970[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.3e-05 0.0012 20.1 2.2 1 23 96 118 96 118 0.98

2 15 1.3e-05 0.0012 20.1 0.7 2 23 125 146 124 146 0.96

3 15 0.0075 0.64 11.4 2.7 1 23 152 174 152 174 0.98

4 15 2.9e-05 0.0025 19.0 0.3 1 23 180 202 180 202 0.98

5 15 1.1e-05 0.00092 20.4 2.0 1 23 208 230 208 230 0.99

6 15 2e-05 0.0017 19.5 3.1 1 23 236 258 236 258 0.99

7 15 3.3e-05 0.0029 18.8 1.6 2 23 265 286 264 286 0.95

8 15 7.4e-06 0.00063 20.9 0.9 1 23 292 314 292 314 0.99

9 15 1.5e-06 0.00013 23.1 0.5 1 23 320 342 320 342 0.99

10 15 2.9e-06 0.00025 22.2 1.1 2 23 348 369 347 369 0.97

11 15 0.0026 0.22 12.8 0.5 1 23 375 397 375 397 0.98

12 15 0.00024 0.021 16.1 2.4 1 23 403 425 403 425 0.99

13 15 2.6e-06 0.00022 22.3 2.5 1 23 431 453 431 453 0.99

14 15 4e-05 0.0035 18.5 0.4 1 23 459 481 459 481 0.99

15 15 0.00026 0.022 16.0 0.5 1 23 487 509 487 509 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.3e-05	0.0012	20.1	2.2	1	23	96	118	96	118	0.98
2	15	1.3e-05	0.0012	20.1	0.7	2	23	125	146	124	146	0.96
3	15	0.0075	0.64	11.4	2.7	1	23	152	174	152	174	0.98
4	15	2.9e-05	0.0025	19.0	0.3	1	23	180	202	180	202	0.98
5	15	1.1e-05	0.00092	20.4	2.0	1	23	208	230	208	230	0.99
6	15	2e-05	0.0017	19.5	3.1	1	23	236	258	236	258	0.99
7	15	3.3e-05	0.0029	18.8	1.6	2	23	265	286	264	286	0.95
8	15	7.4e-06	0.00063	20.9	0.9	1	23	292	314	292	314	0.99
9	15	1.5e-06	0.00013	23.1	0.5	1	23	320	342	320	342	0.99
10	15	2.9e-06	0.00025	22.2	1.1	2	23	348	369	347	369	0.97
11	15	0.0026	0.22	12.8	0.5	1	23	375	397	375	397	0.98
12	15	0.00024	0.021	16.1	2.4	1	23	403	425	403	425	0.99
13	15	2.6e-06	0.00022	22.3	2.5	1	23	431	453	431	453	0.99
14	15	4e-05	0.0035	18.5	0.4	1	23	459	481	459	481	0.99
15	15	0.00026	0.022	16.0	0.5	1	23	487	509	487	509	0.99

Sequence Information

Coding Sequence: ATGAGTACGCCTCAGCAAGAAACGTCAGTCAAACTAGAAGATGAATATGATGAACAGAACCTATTTCCACAAATCGAgcaaatttttttcaaattaaCGACTGTCAAAGAAGAAAACTGTAAGGAAGAGTTGCAGAACATTGAAGTACAGGACGATAATATAAAGACAGAACCAAGATGTGATTTACACTCTGAATTGGATTTAGACGTTAAAACTACGGATTGCGAATATTCTTCATCACTTACAACACCTGTACAATCACAGACGGCAACGTCAGATCGTCCACATAAATGCACAATCTGTGACTACTCAACCGCACATTCGGCTAGCCTTGTGACGCACATGCGAGTCCATATGGGAATAAAACCGTTGAAATGCTCAATCTGCGACTACTCAACCGCACATCCGAGTAGCCTTATAAGGCACACGAGGGCGCACACCGGAATAAAACCATTCAAATGCTCAATCTGTGACTTTGCAACCGCACATCCGGAAAGCCATAAAAAGCACATGCGAGCGCACGCCGGAATAAAACCGTTTAAATGTACGATTTGCGACTACTCGTCCATAGCTTTAGATAATCTCAAAAGGCACATGGGAACGCATACGGGAATAAAATCGTTTAAATGTACGGTCTGCGATTACGCAGCCGTCGATTCCCATTACCTTAAACGACACATGAAAACGCATCAAGCGATAAAAGACTTTAAATGCGTAATCTGTGAGTTTTCCACGGTGCATTCGAGTAACCTTAAAAAGCACATGACTACTCATACGGGATTAAAACCGTTGAAATGTACGGAATGTGACTATTCAACCGCGGATAAGCATAGCCTTAAAAGGCATATGGTACTACACACAGGAATTAAATCGTTTAAATGTACGGAATGTGATTACTCAACTGCGCTATCGGAAAACCTTAAAAATCACATGAGTACGCATTCCGGAATAAAACCGTTCAAGTGTCCGGAATGTGACTACTCAGCTGCGCGATCGCAGAGCCTTAAAAACCACATGAACACGCATACGGGGGTAAAACTTAAATGCACTGAATGTGACTACTCAGCTGTACATGCGGTGAACCTTAAAAGGCACATGAGGACGCATTCGGAGTTAAAACCGTATAAGTGTGGGGTCTGCGACTTTGCAACCGCACATTCGGTTAGCCTTAAATACCATGTGAGTGTGCATACAGGAATAAAACCGTTTAAGTGCACAATCTGCGAGTACGCATCTGCGCACTCGCAGAAACTTAGACAGCACATGAGTACGCACACGGGGATAAAACCGTATAAGTGTACGGTCTGTGACTACTCAACTGCGCAATCGAAGTATCTTAAACAGCACATGAGGAAGCACACGGGAATCAAACCGTTTAAGTGTGTAGTGTGTGAATATTCGACCGCACATCCAGCGGGCCTTAAGGTGCATATGAGACGGCATACCGGAATCAAGCCGTTTAAATGTTCGTTATGCGAGTATTCCGCCGTTGAATCGGGGAGTCTTAAATCACACATGAAAACGCATACACGACAATAG
Protein Sequence: MSTPQQETSVKLEDEYDEQNLFPQIEQIFFKLTTVKEENCKEELQNIEVQDDNIKTEPRCDLHSELDLDVKTTDCEYSSSLTTPVQSQTATSDRPHKCTICDYSTAHSASLVTHMRVHMGIKPLKCSICDYSTAHPSSLIRHTRAHTGIKPFKCSICDFATAHPESHKKHMRAHAGIKPFKCTICDYSSIALDNLKRHMGTHTGIKSFKCTVCDYAAVDSHYLKRHMKTHQAIKDFKCVICEFSTVHSSNLKKHMTTHTGLKPLKCTECDYSTADKHSLKRHMVLHTGIKSFKCTECDYSTALSENLKNHMSTHSGIKPFKCPECDYSAARSQSLKNHMNTHTGVKLKCTECDYSAVHAVNLKRHMRTHSELKPYKCGVCDFATAHSVSLKYHVSVHTGIKPFKCTICEYASAHSQKLRQHMSTHTGIKPYKCTVCDYSTAQSKYLKQHMRKHTGIKPFKCVVCEYSTAHPAGLKVHMRRHTGIKPFKCSLCEYSAVESGSLKSHMKTHTRQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00137208;
90% Identity: iTF_00137208;
80% Identity: iTF_00137208;