Agra003117.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- ZBTB40
- Assembly
- GCA_963971325.1
- Location
- OZ020221.1:12671982-12679050[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00048 0.041 15.2 0.2 1 21 11 31 11 32 0.90 2 23 0.013 1.1 10.6 0.5 2 23 66 88 65 88 0.94 3 23 0.038 3.2 9.2 0.3 1 23 110 132 110 132 0.97 4 23 0.0016 0.14 13.5 0.6 1 23 136 158 136 158 0.98 5 23 0.001 0.088 14.1 0.4 1 23 163 186 163 186 0.98 6 23 0.099 8.5 7.9 2.3 1 23 192 214 192 214 0.86 7 23 0.00049 0.042 15.1 1.3 1 23 220 243 220 243 0.97 8 23 8.9e-06 0.00076 20.6 1.8 2 23 255 276 254 276 0.98 9 23 0.00039 0.033 15.5 0.3 3 23 284 304 282 304 0.95 10 23 7.8e-06 0.00067 20.8 0.2 1 23 310 332 310 332 0.98 11 23 1.6e-06 0.00013 23.0 0.9 1 23 338 360 338 360 0.98 12 23 0.0084 0.72 11.3 1.7 1 22 366 387 366 387 0.96 13 23 0.0031 0.27 12.6 0.9 2 23 422 444 421 444 0.95 14 23 0.003 0.26 12.7 0.5 1 23 463 485 463 485 0.98 15 23 0.0002 0.017 16.4 0.2 1 23 489 511 489 511 0.98 16 23 0.97 83 4.8 0.7 1 23 516 539 516 539 0.93 17 23 0.16 14 7.2 1.3 1 17 545 561 545 567 0.74 18 23 0.77 66 5.1 2.3 1 23 573 596 573 596 0.95 19 23 0.00026 0.023 16.0 1.6 2 23 608 629 607 629 0.95 20 23 0.00012 0.0099 17.1 0.5 3 23 642 662 640 662 0.96 21 23 3.4e-05 0.0029 18.8 1.6 1 23 668 690 668 690 0.97 22 23 4e-05 0.0035 18.5 0.1 1 23 696 718 696 718 0.98 23 23 0.03 2.6 9.5 2.0 1 22 724 745 724 749 0.93
Sequence Information
- Coding Sequence
- ATGAAGAAGCCTTTCATAGTGTATGGAAGTTACTTATGTAACATTTGCGGAAAAGATTTTACAGACAAAGGTAGTCTAAGTGGACACTTCAATAGGTTGTTTGGTTTTGGAAGACGAAAGGCCCTAGTTAACTATCGCAGTATTACTGAAGTAGACGATTTAAAACCTAAGAGAAAAAATACGTCAAAATTATGGGAGTGCCGAAAGTGCAAGCAAATATTTCCTAGCATCCGAGCTTTACGAAACCATAGGAAGGAGTTACATGTTCGGGATTTAGACGAATTGAAAAAAATTCAACAACTCACCTTTAACGAATTATCGAAAAAGTTCATGTGTAAAACATGTGCTATGGAATTCGAATCGAAGAAAGAGATTGAAGACCACGTTAAAATTCACGTCGATACATTTAGCTGTTTTATGTGCAACGAGGAATATTCCTCAGCGTATAAACTTTCAGTTCACGTCCAAAGTCATGGAGACGAGAATTTCAAATGTCCATTGTGCGATTATGAAACCCCCAGGAAATATTCTGTATTGGCACATTTGAACAGGAAACATTATCACGAGTATCCGTACAGTTGCCAATATTGTGGAAAGGGCTTCCATGATGTAGTTAACCACCAAGAACATGAGCTCTCTCATACTGGTGGTGGTCCCTTTAGTTGTGTCGTCTGCAATAAAACCTATCCATACTCAAGGTATTTGTTGTCACACCAGCAACGATCCCATAAAGTTATAATTGACGGTATTCTTTTGCCAAATCAATGCACAATATGTAAACGAACGTTTTCAAAACCGGAACGATTAGAAAGGCATTTGAAGACACACAGCAACGAACTGACCCATTTGTGTGATGTATGCGGAAAGGGATTTGCGACTAATGATGGAATTAATAGCCACTACAAGATTCATTCGGATGTTAAACCATACGCATGCAGCTATTGTCCAAAAGCGTTCACAAAAAGGGAATATCTTGTCGCCCATGAGAGAATCCATAGTGGCGAAAAGCCGTTTAAGTGTGGATTTTGTGAGAAAGGATTCAGCCAAAGGTCATCATTAAAAATTCATATAAGAGGACACACGGGGGACAAGCCTTACATTTGTCATTTGTGTAAATCGGGTTTCGTTTCCAGGGGAAGTCTAAATCAACATCATAAAACTTGTATTGGAAGGTCATTCACAATTAGGAGAAAGGAGAAGGGGGAGTATAATTCTGAGGGAGAGGAAAAATGCAGTCCCGCTAGGAATCGGAGAAAGCAGTGGCAATGTAGGAAATGTGGCGAGATACTTAGAACCTCGAGGGCATTGAAAAGTCACCGAAAAGAGAAACACTTTCGAAATACTAAAAATACGTACAAATATATCTACAACCAATTCGAGGATATTTACAGTTGTACAATGTGTGATAGTACTACCAAGAGTAAAGAGGACATGGAAACTCACGTCCAAGTTCACAATAGCACTTATACGTGCGAAGATTGTGGTGGGACATTTGAGAGTGCTTACAAGTACGCTGTGCACATGCAGTTTCACGGTTCTGAACACTTCCTCTGCCCTTTTTGTGATTACAAAACTCTTCGAAAGACTGCTATATTGACTCATATAAACACCAGACACCTAAAGAAGTTCGTTTACAATTGCCAATACTGCGGTAAGGGTTTTGAGGATGTCGTTAAACATAAGGAGCATGAGAGTAGCCATCTGGGGGCACAGTCTTTTACTTGTATCGTTTGCAACAAGCAGTTTTTGTACTCGAGATACTTGTTAACCCACCAACAAAGATATCATAGAGTTACTATCGAAGGAATGCTTCTTCCAAACCAATGCCATATCTGCCGCAGAACGTTCGCCAAATCAGAAACCTTGATCAAACATCTTGTTCTGCATGACATGAATGCGGTAACACGCGGTAAGAATCATTTGTGCGATGTATGTGGGAAAGGATTTTCTGGAAAGGAAAAATTGGATGCCCATTACAGAATCCACACCGGCGTTAAACCGTTCGCTTGTTCTTATTGCACGAAGCGGTTTACCAAGAAGGAATATCTGATTATGCACGAACGCATTCACAGTGgcgaaaaacccttcagatgtGAATTCTGTGGCAAAGGCTTCAATCAAGCTGCGCCACTTCGCATACATGTTCGTGGCCATACAGGAGAACGCCCCTATGTATGTCATATCTGCCAGAATGGTTACATATCCAGAGGCGCtttaaatcaacattttaaAACCTGCAGTGGTCACTGA
- Protein Sequence
- MKKPFIVYGSYLCNICGKDFTDKGSLSGHFNRLFGFGRRKALVNYRSITEVDDLKPKRKNTSKLWECRKCKQIFPSIRALRNHRKELHVRDLDELKKIQQLTFNELSKKFMCKTCAMEFESKKEIEDHVKIHVDTFSCFMCNEEYSSAYKLSVHVQSHGDENFKCPLCDYETPRKYSVLAHLNRKHYHEYPYSCQYCGKGFHDVVNHQEHELSHTGGGPFSCVVCNKTYPYSRYLLSHQQRSHKVIIDGILLPNQCTICKRTFSKPERLERHLKTHSNELTHLCDVCGKGFATNDGINSHYKIHSDVKPYACSYCPKAFTKREYLVAHERIHSGEKPFKCGFCEKGFSQRSSLKIHIRGHTGDKPYICHLCKSGFVSRGSLNQHHKTCIGRSFTIRRKEKGEYNSEGEEKCSPARNRRKQWQCRKCGEILRTSRALKSHRKEKHFRNTKNTYKYIYNQFEDIYSCTMCDSTTKSKEDMETHVQVHNSTYTCEDCGGTFESAYKYAVHMQFHGSEHFLCPFCDYKTLRKTAILTHINTRHLKKFVYNCQYCGKGFEDVVKHKEHESSHLGAQSFTCIVCNKQFLYSRYLLTHQQRYHRVTIEGMLLPNQCHICRRTFAKSETLIKHLVLHDMNAVTRGKNHLCDVCGKGFSGKEKLDAHYRIHTGVKPFACSYCTKRFTKKEYLIMHERIHSGEKPFRCEFCGKGFNQAAPLRIHVRGHTGERPYVCHICQNGYISRGALNQHFKTCSGH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -