Agra018423.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- -
- Assembly
- GCA_963971325.1
- Location
- OZ020225.1:1861988-1864964[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0012 0.11 13.9 1.3 2 23 153 174 152 174 0.96 2 16 1.5e-05 0.0013 19.9 4.7 1 23 179 201 179 201 0.98 3 16 4.8e-05 0.0042 18.3 4.2 1 23 207 229 207 229 0.97 4 16 0.0013 0.11 13.8 1.3 1 20 235 254 235 256 0.94 5 16 1.9e-05 0.0017 19.6 0.3 1 23 263 285 263 285 0.97 6 16 0.00015 0.013 16.8 0.1 1 23 451 473 451 473 0.96 7 16 9.2e-06 0.00079 20.6 5.1 1 23 479 501 479 501 0.97 8 16 5.1e-05 0.0044 18.2 7.6 1 23 507 529 507 529 0.97 9 16 0.0015 0.13 13.6 0.2 1 23 534 557 534 558 0.94 10 16 0.0037 0.32 12.4 3.4 1 23 569 591 569 591 0.98 11 16 9.1e-07 7.8e-05 23.7 5.3 1 23 597 619 597 619 0.98 12 16 1.4e-06 0.00012 23.2 0.5 1 23 626 648 626 648 0.96 13 16 1.4e-05 0.0012 20.0 1.3 1 23 654 676 654 676 0.98 14 16 1.9e-06 0.00016 22.8 0.7 3 23 684 704 682 704 0.96 15 16 3.4e-05 0.003 18.8 0.1 1 23 710 732 710 732 0.99 16 16 0.029 2.5 9.5 0.2 1 23 737 760 737 760 0.97
Sequence Information
- Coding Sequence
- ATGGATTATTCCAGCGTCGATTTATCGCGTCTATGTCGCACGTGCAGGAACGAATCGTCCGATATGCGCCCGCTTTACACGCGAGACTCCGCCAGCGGCAAAGAGAACCCCCGAATAGACGAGATGCTCATGACTTGCGCGGCCATCCAAGTGGACGCCACTGATGGTTTACCGAACACGATATGCCGCACTTGCGTTTACCAGTTAAAAAACGCATTCACTTTCAAGCAATTATGCGAACAGACCGACCAGTTTTTCAGGAGTGTCGTAAAACCGGCAAAAATCAAAGACGAACAGTCGAGCGATATATCGACTCTCGCAAACAGCGTAATATGCGAATTAAAGGAATTACCGACGGAGGAAAACAATCTAGACGTACTTTCCGACGCCTCGGACgtcgaaaaaaaagaaaagtccGATTACATACAAATTTTAGACAACAACATAATGCTTTTAACGTGCCGTGAGTGTCGTAAAGATTTCACTACCATAGATGGGTTAAAATCGCATAAACGTCTTCACACAGGGCAATTATTCAAATGCAAACAGTGCAATAAGGAATATACACGGTTAAGTCACCTGCAAAGGCATGAATTGTCGCACGATCGCCGTAAGTACCACGTTTGTAAAATCTGTAATAAAACCTTGACGAGATTTGACCATTTAAAACGACACTTGATAATCCATTTAAAAGATAAACCGTACAGCTGTGATTCATGTAATAGAGGCTTTAACCGTTCCGAACATTTATCGAACCACAAAATTAAGTGCAAAGGAGAGCCTGCGTTTATTTGTGAGCTTTGCAATAAAGCGTTTAACCGTGAAGATAGTTTATCAGTCCATCGGAAAATCCACAACgaaataaacaaagaaattaaACTACCAACTCTGGATAACTTAGAAAATATTGAAGAGCATTACATTGAGGTTGATTGTGATCGAAATATCGTTTCTGAGGACTCCGAGACGGATTTTGACGACGTAATCGAAAACATAATTGAAACTGatgaaaaaactgaaaaaaactCACTTTCTGATCTGGAAGTCTTGACGAATTCCGACGACCTCCAAACTATAACTTCCACGGAGATTTACGCCGAAGAAGATCCTCCGGAACTCATGGAGGAAAAGGCGAAAATCGAGGAGGAACTCTACAAGGAAAATGAGATTTTCTTCGAGGAGGAGTCGGATTCTGAGGATTCGGAATATAGTCCGAAGAAGCAGGCGCCGAGGAGGAGGAAACGGGGTAGGCCGAGGAAGCAGAAGTCAAAGAAGGCCCGCGGGAGGCCCCCGTTGGTCCGGTTGAAGATTAAGGCGGAGGTTAAGAGGGAGCCGGATGATGGGGTCGAGTATCCCTGTCCGGAGTGTAAAGTGGTGTTCAGGAAGCTGCGAGAGTTGGAGAAGCACGTCGTGGTGCACGAAGGGTTGAGGTTGCACGAGTGCAAGACTTGCGGGAAGAGGTTCTCGAGGACGGCTCATCTGCGGAGGCACGAGATAACTCATTCGGAAGAAAAACCGCACGTTTGCGACGTCTGCAAGAAGTGTTTCTCGAGACGGGACCACCTCCAGCAGCACGTCAAGCAGCACCAAGGTGCCGAGTACCCTTGCGAAGTATGCCCGGCCGTGTACAGCCGTCTCGAACAGCTAGACCGCCACAAAGCCGTCAAACACCACATCGGCGATAAAATAATCGGTGAGAAGCGACACAAGTGTTCCGTGTGCCAAAAGGGCTTCACGACGGAGAAGTACCGCGACGTCCACATGAAGAGCCACACCGGCGAAAAAAAATACCGCTGCAAGACGTGCGATAAGACTTTTGTGTCGAAGTCGCATCTCACAGAGCATATGAAGTTCCACAGCGACACCTCCAAGAAGTTTCTGTGCTCGGAATGCGGACAGAGGTTCATCAGGAACGATTATTTGATCATACATATGCGCAGACATCGGGGGGAGAAACCGTTCAAGTGTAAATTCTGCGGGAAGGGGTTCCCGAGGACGACTGACCTTACCGTGCACGAGAGGTACCACACCGGGGAGAAGACGCATCTTTGTATGATTTGTGGTCGTGGTTTTGGAAGggCATACAACTTAACGGTACACATGCGGACCCACACGGGTGAAAAACCGTACCGTTGCTCGTACTGCGACGCAGCATTTGCGCAAGGCAACGATCTGAAGGCGCACGTGCGTCGTCACACCGGGGAACGTTTCATGTGCAATATGTGCCCCGAGACGTTCCTCATGGGTTACCTGTTGACGGCACACAAACGAACAGCCCAtgGTTTGAACATAGTTAGTAATATTAGGCGACTGCAGAACACGACGAGCAAAGTTGAGAACTCGGACGATTCACCTCCTATTACGGTCGAATTGCCCACGCCCGTGATTGTACCAGCGGAGCCGTCTACGTTGTTCTATAGTGAGAGTAAAGTTGAGTTTTGA
- Protein Sequence
- MDYSSVDLSRLCRTCRNESSDMRPLYTRDSASGKENPRIDEMLMTCAAIQVDATDGLPNTICRTCVYQLKNAFTFKQLCEQTDQFFRSVVKPAKIKDEQSSDISTLANSVICELKELPTEENNLDVLSDASDVEKKEKSDYIQILDNNIMLLTCRECRKDFTTIDGLKSHKRLHTGQLFKCKQCNKEYTRLSHLQRHELSHDRRKYHVCKICNKTLTRFDHLKRHLIIHLKDKPYSCDSCNRGFNRSEHLSNHKIKCKGEPAFICELCNKAFNREDSLSVHRKIHNEINKEIKLPTLDNLENIEEHYIEVDCDRNIVSEDSETDFDDVIENIIETDEKTEKNSLSDLEVLTNSDDLQTITSTEIYAEEDPPELMEEKAKIEEELYKENEIFFEEESDSEDSEYSPKKQAPRRRKRGRPRKQKSKKARGRPPLVRLKIKAEVKREPDDGVEYPCPECKVVFRKLRELEKHVVVHEGLRLHECKTCGKRFSRTAHLRRHEITHSEEKPHVCDVCKKCFSRRDHLQQHVKQHQGAEYPCEVCPAVYSRLEQLDRHKAVKHHIGDKIIGEKRHKCSVCQKGFTTEKYRDVHMKSHTGEKKYRCKTCDKTFVSKSHLTEHMKFHSDTSKKFLCSECGQRFIRNDYLIIHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCMICGRGFGRAYNLTVHMRTHTGEKPYRCSYCDAAFAQGNDLKAHVRRHTGERFMCNMCPETFLMGYLLTAHKRTAHGLNIVSNIRRLQNTTSKVENSDDSPPITVELPTPVIVPAEPSTLFYSESKVEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -