Agra023396.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius granarius
Gene Symbol
zfh1
Assembly
GCA_963971325.1
Location
OZ020226.1:23606558-23610006[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.95 81 4.8 5.4 5 23 176 196 173 196 0.90
2 17 0.0014 0.12 13.7 0.9 2 23 214 235 213 235 0.97
3 17 6.6e-06 0.00056 21.0 0.4 1 23 238 260 238 260 0.99
4 17 3.1e-06 0.00026 22.1 0.1 1 23 266 289 266 289 0.98
5 17 4.3e-06 0.00037 21.6 1.7 1 23 295 318 295 318 0.97
6 17 1e-05 0.00089 20.4 0.5 1 23 325 347 325 347 0.97
7 17 6.9e-07 5.9e-05 24.1 3.2 1 23 353 375 353 375 0.98
8 17 0.00017 0.014 16.6 0.4 1 17 381 397 381 398 0.93
9 17 0.54 46 5.6 2.6 2 23 510 531 510 531 0.93
10 17 0.056 4.8 8.7 0.7 1 23 536 559 536 559 0.97
11 17 4.1e-06 0.00035 21.7 2.2 2 23 568 589 567 589 0.98
12 17 0.025 2.1 9.8 0.7 2 23 595 616 594 616 0.97
13 17 5.3e-07 4.5e-05 24.5 0.6 1 23 622 645 622 645 0.98
14 17 1.4e-06 0.00012 23.2 0.1 1 23 651 673 651 673 0.98
15 17 0.00024 0.021 16.1 8.0 2 23 681 702 680 702 0.96
16 17 1.1e-06 9.8e-05 23.4 2.4 1 23 708 730 708 730 0.98
17 17 3.6e-05 0.0031 18.7 1.4 1 21 736 756 736 757 0.95

Sequence Information

Coding Sequence
ATGTCGAATATATGCCGTCTATGTTTAGAAACGAACATGAAAAACTACTACAGCATGGAAACATCTGACTATCGACACAAAATGCGTTCAGTCCTACCCGAAATTAACATTGACACGGTCGAGGACCCTTTAATATGCCTGCAATGTTCCGAATTATTGCTAAGCGCATATTACTTCAAAAGCAATTGTTTACAAACAAACGAAGAACTGGAAACATACGCAACAGACGCTGGAAAGCCGATAAACTTGGAGAAATTTTTACGAATGAAAAACCAAGCTGAATTGATAAACATTAAAGTTGAGCCTGACGAAAAATGCGTCCCGACTTTAGAACTGGATGAAGATTATTCTGACAATCAAGAAGCACCCCTTCCTGAGTTTGTTGCTAGtgattttgagcaaaaaacaaaTGAGGAAGTTAGTCTGCAAACAGAAGAAGTTATAACAGAAAAAGATATAAATCAAAAGGTACCAGAAAACAGTACAAGTATTACGCAAAAACCAAAATTTGTAATACATAAATGCatgtgtaataaaatatttacctgTAAGAGAAACTTAGAGGCACATATGAAACGATTCAAGCATAAAGTTCCGAACAATGATGTCACCGGTCTTAAAAGAAACACAATCGGAGACAAGTGTACATTATGCAAACGAGTATTTTTGAATAAGAAAGCTTTAGAAAATCACATATTGAGACACGATCTTTACACATGTTCCATTTGCAAAAGAATCACGTCTTCTAAAGTGGCGCTAGAGGAACATATGCGAACGCATACCGGTGAAAGGCCTTTCCAATGTTCATATTGCGGAAAGGCGTTTGCGCAAGCCGGTACTTTAGGTACGCACATAAAGAGCGTACATAGTTCCGAAAGACCGCATGTTTGTAGTACGTGCGGTCAAAATTTTTCGGTACGAGGGAATTTAACAAAACATATGAAATCGTTGCACGGTAATCTCAAAAAGAATTTTATCTGTAGTTATTGTGGTAAGGGGTTTAGTATTAATAGTAAGTTGGAGCAGCACTTGAAATGGCATACGGGTGTTAGGAATTTTTATTGCCAGGTGTGCAATAAAAGTTTTGTCGATAAGGGATGTTTGACGAAGCATATGCGGATACATAATGGGGAGAAACCGTTCCAATGCCCCATTTGCCCGAAAACGTTCACGCAGAATTATAATATGAAGGACATTGATACCGTTGCACGTCCCCTTATATGTTCAGATTGCGCAGACTTTTTATCGCAGGCTTACACCTTCAAATCTAAATGCTTGGAAAACGACAACCGAATTAAAGATTTTTTGACGGAtggcaataaaataaatttagagGAAGTCCTCATGGAGAAATGCATAGAACATGTGGTAGTTGAGCAAGGACAGGAGGAAACGCATGATATAAAAGTAGAATTACAAGAATTTGACGTGACATTTGATACACCTGATGCAGAAGAGACGTTAATCGAAGAAAACATCGAAAAAGTCAATACTGACTCTTCACCCAAgacaaaaaacgataaagaaCAGTGTAAACTGTGCAGGAAATCGTTCAAATTCGGTCGGAGATGGTTCGACCACGTAAAATCCCATTTCGCTGAGCGATACGTTTGCGTCGCATGTTTCCGGGGTTTCAACATAAAATCCGAATTCCTTACGCATCGGAAAACCGAACACGACGAAGACTTACCCGCCGTCACCAAATGCAAGATTTGCAACAAGAAATTCATGTACGCGGTCAATTTAGAGAAACACATGAAAAAACACGAAGAAGACAATTTAGAATGCAAAGAATGCCATCTAAGGGTAAGCTCAACAGCACGGATGATAGAACACATGCGTGTCCACACAGGAGAACGTCCGTATCAATGCAACTTTTGCGGGAAAGCGTTTGCGCAGAATAGTACTTTATCGACCCACGTTCGAAGTATACATATGTCGGACCGTCCGTACAGTTGCGAGATCTGCGGGAAGACTTTCCCGGTGCGTGGGGCTTATACGGCGCATATGAAGGTACATGAACCTTTGGAGAAGAATTGCGTTTGTCATTTCTGCGGGAGGGGGTTTAGACAGCAGAGTTGTTTACGTAAGCACTTGAAGTGGCATATCGGTGATCGAAATTTTGTTTGTCAGGTTTGTAAAAAGGGTTTTGTTAATAATCACGGGTTGAAAAAACATATGCGGATGCATAACGGGGACAGGCCCTACGAATGTCACCTCTGCGGGAAGAGGTTTACGCAGAGCGGGAATAAGAAGATACATTTGAAAAGTTGTTCGAGGAGGCAACTCGATGGTGGAAGTGTTATAAGTAAAAATGCGGAAGGTAAAAATGTTGTAGATAGGAATATTGCTGATAAAAATGAGGTTGATGGTGCTGTAGTTAAAGATATAAGTGTTATCGGTTGTAGTACAGACACTACAGACACAACTGGTGTGTATGTCAATAACAAAGAGTATCAATTAGTGAATTATATTGATAATAATTGA
Protein Sequence
MSNICRLCLETNMKNYYSMETSDYRHKMRSVLPEINIDTVEDPLICLQCSELLLSAYYFKSNCLQTNEELETYATDAGKPINLEKFLRMKNQAELINIKVEPDEKCVPTLELDEDYSDNQEAPLPEFVASDFEQKTNEEVSLQTEEVITEKDINQKVPENSTSITQKPKFVIHKCMCNKIFTCKRNLEAHMKRFKHKVPNNDVTGLKRNTIGDKCTLCKRVFLNKKALENHILRHDLYTCSICKRITSSKVALEEHMRTHTGERPFQCSYCGKAFAQAGTLGTHIKSVHSSERPHVCSTCGQNFSVRGNLTKHMKSLHGNLKKNFICSYCGKGFSINSKLEQHLKWHTGVRNFYCQVCNKSFVDKGCLTKHMRIHNGEKPFQCPICPKTFTQNYNMKDIDTVARPLICSDCADFLSQAYTFKSKCLENDNRIKDFLTDGNKINLEEVLMEKCIEHVVVEQGQEETHDIKVELQEFDVTFDTPDAEETLIEENIEKVNTDSSPKTKNDKEQCKLCRKSFKFGRRWFDHVKSHFAERYVCVACFRGFNIKSEFLTHRKTEHDEDLPAVTKCKICNKKFMYAVNLEKHMKKHEEDNLECKECHLRVSSTARMIEHMRVHTGERPYQCNFCGKAFAQNSTLSTHVRSIHMSDRPYSCEICGKTFPVRGAYTAHMKVHEPLEKNCVCHFCGRGFRQQSCLRKHLKWHIGDRNFVCQVCKKGFVNNHGLKKHMRMHNGDRPYECHLCGKRFTQSGNKKIHLKSCSRRQLDGGSVISKNAEGKNVVDRNIADKNEVDGAVVKDISVIGCSTDTTDTTGVYVNNKEYQLVNYIDNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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