Basic Information

Insect: Aphodius granarius
Gene Symbol: -
Assembly: GCA_963971325.1
Location: OZ020227.1:9272908-9280732[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 8.6e-05 0.0074 17.5 2.5 1 23 387 409 387 409 0.97

2 18 2.3e-05 0.002 19.3 1.2 1 20 415 434 415 437 0.94

3 18 1e-05 0.00087 20.4 1.0 1 23 443 465 443 465 0.98

4 18 0.00034 0.029 15.7 4.0 1 21 471 491 471 493 0.95

5 18 0.00018 0.016 16.5 4.7 1 23 499 521 499 521 0.99

6 18 3.4e-05 0.0029 18.8 5.3 1 23 527 549 527 549 0.97

7 18 8.8e-06 0.00075 20.6 7.1 1 23 555 577 555 577 0.97

8 18 1.3e-07 1.1e-05 26.4 2.7 1 23 583 605 583 605 0.98

9 18 9.9e-05 0.0085 17.3 6.7 1 23 611 633 611 633 0.97

10 18 5e-06 0.00043 21.4 5.5 1 23 639 661 639 661 0.98

11 18 6.3e-07 5.4e-05 24.2 2.8 1 23 667 689 667 689 0.98

12 18 2.9e-06 0.00025 22.1 6.1 1 23 695 717 695 717 0.98

13 18 7.4e-06 0.00063 20.9 8.9 1 23 723 745 723 745 0.98

14 18 2.3e-05 0.002 19.3 7.7 1 23 751 773 751 773 0.98

15 18 1.5e-05 0.0013 19.9 7.1 1 23 779 801 779 801 0.97

16 18 0.00022 0.019 16.2 0.2 1 23 807 829 807 829 0.97

17 18 0.035 3 9.3 5.1 1 23 839 861 839 861 0.98

18 18 9.6e-08 8.3e-06 26.8 0.3 1 23 867 889 867 889 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	8.6e-05	0.0074	17.5	2.5	1	23	387	409	387	409	0.97
2	18	2.3e-05	0.002	19.3	1.2	1	20	415	434	415	437	0.94
3	18	1e-05	0.00087	20.4	1.0	1	23	443	465	443	465	0.98
4	18	0.00034	0.029	15.7	4.0	1	21	471	491	471	493	0.95
5	18	0.00018	0.016	16.5	4.7	1	23	499	521	499	521	0.99
6	18	3.4e-05	0.0029	18.8	5.3	1	23	527	549	527	549	0.97
7	18	8.8e-06	0.00075	20.6	7.1	1	23	555	577	555	577	0.97
8	18	1.3e-07	1.1e-05	26.4	2.7	1	23	583	605	583	605	0.98
9	18	9.9e-05	0.0085	17.3	6.7	1	23	611	633	611	633	0.97
10	18	5e-06	0.00043	21.4	5.5	1	23	639	661	639	661	0.98
11	18	6.3e-07	5.4e-05	24.2	2.8	1	23	667	689	667	689	0.98
12	18	2.9e-06	0.00025	22.1	6.1	1	23	695	717	695	717	0.98
13	18	7.4e-06	0.00063	20.9	8.9	1	23	723	745	723	745	0.98
14	18	2.3e-05	0.002	19.3	7.7	1	23	751	773	751	773	0.98
15	18	1.5e-05	0.0013	19.9	7.1	1	23	779	801	779	801	0.97
16	18	0.00022	0.019	16.2	0.2	1	23	807	829	807	829	0.97
17	18	0.035	3	9.3	5.1	1	23	839	861	839	861	0.98
18	18	9.6e-08	8.3e-06	26.8	0.3	1	23	867	889	867	889	0.97

Sequence Information

Coding Sequence: ATGAACAACGAGGGGCAGAACCCCCTCAACGGGGGCCACAACACCCACAATACACCGAACGAAGAAggAAACACTCAAAGACCTCCGACTACAACAACGGTACCAACCGATTTGAGAGTTAACACCGCATTAAGTGCTGTTACGTTAAGTAACGTGGCAAAATACTGGGTGCTTACTAATTTGCTGCCTGGACCTATTCCGCAAGTGTATAGTTTGCCTGGGACAGCAAGAACTGATAATCAAGGAAAAATTACACAGGATGGTATGATGGGCCAACATACAAACCTGATAAATGCAGATTCATTGCTTCTGCAACAACACCAGCAAATACCTGTGAGCATAGCAACATCACAGGCGATGCCTAACCTTTCGTTACCGTCAAATGCGATGCACATCGATAAccaacagcaacagcaggcCCAACAGAACCACAACCAGATCAATAACCACCAGTCAGAAGCCCAGACAATGGTTACACAGTCACATAACCAAATGAACAACCAGAACCAAAATCAACAAAACCAAACTATGGTTGTCCAAGTGCAGGATAATAATTTAGTGTCTGTTATTGATGAGAACAAGGAACACAAGGAGTTAATATCAAATCAGCTTCAAGGCCTCAATGACAATAATCAAGGGATTAATCAGAATTTGACTGTGCAGCAGTTACATCACTTACAGGTGCAACAGGTACTTGACAACGTGGTCCGCATGGAAAACCCAGTAGAGAACAACCAAGGTAACGGTGCCGAACAAGACATGCAAGACCAAGGCGGCATGATAATAAAAGACGAAAAAACCCTTCAGAACTGCGCGAAATTCTCCCAGTTCGGCTTACAAGACATCAAAACGAACCTCATGGACGTCCGGACGCCCGACGGCAGCATCGTCAAAATCTCCGGCATCCAAGAACAAGACCTAGCCAAATCCCTAGGCGTAGAACTCGTTCAAAACATGTACAAAGTAAACGTCGAAGACATCAATAATTTACTGACCTATCACGAGGTTTTCGGGAAATTACAAGGTGACATCGCCACAGGACCCATCGTTCAGAACAACGTCCAACAGAATAATATCGCGATCGTAACACCCAAAACTTTAGTTGAGAACGAAGAAAACGGGGGAACCGTTCCCGGAGAAGGTGGGATAAATTCGAACCACGTTTGCGACATGTGCGGGAAGATGTTTCAGTTTAGGTATCAATTGATCGTACATCGGCGTTACCATGTGGAACGGAAACCGTTTACTTGTCAAGTTTGTGGGAAAGCGTTTACAAGCGCCGCGGAATTAACAAGACACGGAAAATGCCACTTAGGGGGTAGTATGTTTACCTGTTCGGTGTGTTTTCACGTTTTCGCGGACGCTGCGAGTTTAGAGCGACACATGAAGCGACATTCTACGGAAAAGCCGTACAATTGCACGTTGTGCGGGAAGGCGTTTGCTAGAAAAGAGCATTTGGATAACCATACGAGGTGTCACACTGGGGAGACGCCGTATCGATGTCAGTTTTGCGCGAAAACGTTCACGAGGAAAGAGCATATGGTGAATCACGTGAGGAAGCACACGGGAGAGACGCCGCATCGCTGCGAGATCTGCAAGAAGAGTTTTACTCGGAAGGAGCACTATAATAATCACGTTATGTGGCATACCGGAGAGACGCCTCATCATTGCACCATCTGCGGGAAGAAGTATACTAGACGGGAGCATTTAGCGAATCATATGAGGTCGCACACAAACGACACACCGTTCAGGTGCGAGATCTGCGGGAAAAGCTTTACGAGGAAGGAGCATTTTACGAATCACATAATGTGGCACACGGGGGAAACCCCGCATCGATGCGACTTCTGCTCGAAAACGTTCACGCGGAAAGAGCACCTGTTGAACCACGTGCGTCAGCACACGGGCGAGTCGCCTCATAGGTGTGCCTACTGTTCCAAATCTTTCACCAGGAAGGAGCATTTGATTAATCACATACGGCAACATACAGGAGAAACACCGTTCAGGTGTAGTTATTGCCCAAAGGCGTTTACAAGAAAGGACCATCTAGTGAACCACGTACGCCAACACACGGGGGAATCACCTCACAAATGCCCGATGTGTACGAAATCGTTTACGCGAAAGGAGCACCTCACGAATCACGTACGTCAACATACGGGGGAGTCCCCTCATCGATGCCACTATTGTTCGAAGTCATTCACGAGGAAAGAACATCTCACGAATCACGTTCGAATCCATACCGGGGAATCCCCGCATCGTTGCGAATTCTGCCAGAAAACGTTCACCAGGAAAGAGCATCTCACAAATCATCTGCGCCAGCATACAGGGGAAACTCCGCACTGTTGCAACGTCTGCTCGAAGCCGTTCACCCGCAAAGAGCATCTGATCAACCACATGCGATCGCATACAGGCGAACGCCCATTTGCCTGCGGGGAGTGCGGAAAATCATTCCCACTCAAAGGCAATCTTCTATTCCACCAACGTTCGCATAATAAAGGCGCAGCGGCGGAACGACCGTTCCGCTGCGACCTCTGCGATAAAGACTTCATGTGCAAAGGTCACTTGGTGTCGCACAGGCGATCGCACAGCGGCGAACGGCCGTTTGCGTGTCCCGAATGCGGGAAAACGTTTGTGGAAAAGGGGAATATGATGCGTCACATGCGCAAGCATACGGCGGACAATGCGCAGATTACTACGCAGGCGCAGACGTCGACGACCAGTGCTGCTGCGCAAACCAGTGTGGCGAATTTGCAAATTCCGCAGGTTTCGCAAGTGCAGACAATGGGCAATTCGACGGGCGTCGTTCAGCAAGCGCAGCACATGCAGATTCACGCGCAGAACGCGCATCCGGTTGTCGTGCCTACCGCCAACGGGAACGTCCTGGCCAGTTATTGA
Protein Sequence: MNNEGQNPLNGGHNTHNTPNEEGNTQRPPTTTTVPTDLRVNTALSAVTLSNVAKYWVLTNLLPGPIPQVYSLPGTARTDNQGKITQDGMMGQHTNLINADSLLLQQHQQIPVSIATSQAMPNLSLPSNAMHIDNQQQQQAQQNHNQINNHQSEAQTMVTQSHNQMNNQNQNQQNQTMVVQVQDNNLVSVIDENKEHKELISNQLQGLNDNNQGINQNLTVQQLHHLQVQQVLDNVVRMENPVENNQGNGAEQDMQDQGGMIIKDEKTLQNCAKFSQFGLQDIKTNLMDVRTPDGSIVKISGIQEQDLAKSLGVELVQNMYKVNVEDINNLLTYHEVFGKLQGDIATGPIVQNNVQQNNIAIVTPKTLVENEENGGTVPGEGGINSNHVCDMCGKMFQFRYQLIVHRRYHVERKPFTCQVCGKAFTSAAELTRHGKCHLGGSMFTCSVCFHVFADAASLERHMKRHSTEKPYNCTLCGKAFARKEHLDNHTRCHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHYNNHVMWHTGETPHHCTICGKKYTRREHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCAYCSKSFTRKEHLINHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCPMCTKSFTRKEHLTNHVRQHTGESPHRCHYCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRSHTGERPFACGECGKSFPLKGNLLFHQRSHNKGAAAERPFRCDLCDKDFMCKGHLVSHRRSHSGERPFACPECGKTFVEKGNMMRHMRKHTADNAQITTQAQTSTTSAAAQTSVANLQIPQVSQVQTMGNSTGVVQQAQHMQIHAQNAHPVVVPTANGNVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00981416; iTF_00138304;
90% Identity: iTF_00138304;
80% Identity: -