Agra020115.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius granarius
Gene Symbol
znf711
Assembly
GCA_963971325.1
Location
OZ020225.1:18712746-18716167[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.0016 0.14 13.5 1.3 1 21 13 33 13 34 0.96
2 23 0.028 2.4 9.6 0.0 5 23 85 103 83 103 0.95
3 23 0.41 35 5.9 0.8 1 23 118 140 118 140 0.96
4 23 1.4e-05 0.0012 20.0 3.9 1 23 146 168 146 168 0.99
5 23 9.6e-05 0.0083 17.4 2.0 1 23 175 197 175 197 0.99
6 23 0.00039 0.034 15.4 1.7 1 23 203 225 203 225 0.98
7 23 2.3e-05 0.0019 19.3 0.7 1 23 231 254 231 254 0.97
8 23 1.4e-06 0.00012 23.2 2.9 1 23 260 282 260 282 0.98
9 23 6.3e-06 0.00054 21.1 2.5 1 23 288 310 288 310 0.99
10 23 3.9e-06 0.00033 21.7 0.7 1 23 316 338 316 338 0.99
11 23 1.4e-05 0.0012 20.0 0.4 1 23 344 366 344 366 0.99
12 23 0.0013 0.11 13.8 1.9 1 23 372 395 372 395 0.96
13 23 0.00076 0.065 14.5 0.2 1 23 401 423 401 423 0.97
14 23 0.00058 0.05 14.9 3.4 1 23 429 451 429 451 0.98
15 23 2.6e-06 0.00022 22.3 0.4 1 23 457 479 457 479 0.99
16 23 0.00012 0.01 17.1 2.5 1 23 485 507 485 507 0.99
17 23 5.6e-06 0.00048 21.3 4.3 1 23 513 535 513 535 0.99
18 23 4.7e-06 0.0004 21.5 4.6 1 23 541 563 541 563 0.99
19 23 3.9e-06 0.00034 21.7 1.6 1 23 569 591 569 591 0.99
20 23 0.00073 0.063 14.6 0.4 1 23 597 619 597 619 0.99
21 23 2.5e-05 0.0021 19.2 0.3 1 23 625 647 625 647 0.98
22 23 3.3e-05 0.0029 18.8 2.9 1 23 653 675 653 675 0.99
23 23 0.047 4.1 8.9 2.1 1 21 681 701 681 704 0.95

Sequence Information

Coding Sequence
ATGGATCCAGTTGATCATACACCTCAACTGGAGAAGTTTATCTGTAGCTTGTGTGGGTTCAAGTTTAGCAAACTGAAGTTTTTAACAAACCACATTCGGTTTTGTAAAGACATCGAGAACCCGGCTGACAGATTGGGGGCAGGCGGAAATAGCTGTGTAACTATTATCAAAGATGAACAAGGCAAAAAGGAGACTCAAGATGAAGAAAGTTCCAAAGACCACTCAACAATACACGAGACATATGAACCTAGCTGGTGTGATTATCAAACGTCGCAATCAAGCGAATACAAAGAGCATATGATATCACATGAGGGAAAGAAGCAGAAACGTGGAAGGAataaagaaaagaaatataaatgcATTTTATGTAGCTACGCTAGTACACTACATGCCAAACTTGCAGAGCATATCAGAACGCATACAGGCGAAAGGCCTTTTCGATGCAGCGAATGCGACTACACTTGTATTAGACGTGACACCCTTAAAGTGCACATGAAGAGACATACGGTAGTAGAAAAGCCATACAAGTGCACGATTTGTTCTTACGCTACCGACCTATCGGCTCATCTAAAACGCCACATAAAAACCCACACCGGAGAAAAGTCATTTAAATGCACATTATGCGACTTTACTACTGCATACAAAAACAGTCTTAACATACATATGCAATACCACGCTGGAGACAGACCGTTCAAGTGTTCCCTCTGTGAAAAGGCTTACATCAAAAACGATCAGCTTAGAAAACATATATCCATTCAACATATGGGAATTAGGAAGTTTATATGCAAGATATGTCATTATCCGTTTTCATCATCCAGTGGTCTTAAGACCCACATGAAGAGGCACATGGGAATTAAGCAATTTAAATGCAAAATATGCGACTACGCTTGTGTGGAACGTGGCACCTTAACAAAACACATGAGGACCCACACCGGAGAAAAAGGGTATAAATGCAACATCTGTGACTATGCTGCTACTCACGAAAGTTCACTTATAAACCACATAAGAACCCACACTGGTGCAACACCATATAAATGCACGGTGTGTAATTATGCGGGTAAGCAACGCGGTGCTCTCACTCTTCATATGCGCACACACACAAAAGAGACTCCGTTTAAATGTATGTTTTGTGATTATGCCAGCGCGAATAATTACCATCTTAAGATACACATCAAGGCCAAGCATACTTTAGAAAGAACATTTGATTGCACGAATTGCGATTACGCTGCTATTGATCGTTGGCAACTTAAAAACCACATGCTGAGTCATACGCAAGACAGGCCATTTAAATGTAATATATGTAATTATACAGCAAAGGCAAAACATTACCTCAATCGGCATTTACGCTTACACACCAGAGAAAAATCGTATAAATGTGATATCTGTGACTATGCTTATGCAGATATGTCTAATCTCAACCGGCATAAAAAAATTCATTCAAAAGAGAAACCGTTTAAGTGTAGTCACTGTGACTATGCCACTGTTTATGCCAATTATCTTAGAGTCCATATGAAAAGACATTCAGACGAAAAATCGTATAAATGTAACATATGCGACTTTAAAAGTAGAACAAGCAGCCATCTTAGGATGCATATACGAACGCATACCGGTCAAAAGCCATATAAATGCAACAAATGTGATTATGCGTGTACGACGAATACCAACCTTAAAAACCATATGCTCAGACACACGAAACTGAGACCGTACAAATGCACCGTGTGTCAGTTTGCGTTTAAAACGGCGTCACGTCTCAGAAATCATATGAAAATTCACACCGGAATTAAACCATATAaatgtgataaatgtggttaTGCATCTGCGTTCCGTGCTAATCTTGTGGGACACAAACGGAAGCATACCGGGGAGAGGCCGTTCGAGTGCAAAACGTGCGGTTTTGCTGTTAGGACACAGAGCGCCCTTCTGCAGCATCTCATGACGCACTCCGCGGAGAAACCGTTTAAATGCGGTAGCTGCGATTATGCTTGTAAAAGGACTGCCGATCTGAAGCAGCATATGAGAACGCATACAGGTGAACGACCGTTCAagtgcacgatttgtgactatGCTGCTTCGATAAGGAAGACCCTTAAGGATCACATGCAATGTCGTCATAATAAGACCAAAAAACGCAAATCAAGGAACAAGTAG
Protein Sequence
MDPVDHTPQLEKFICSLCGFKFSKLKFLTNHIRFCKDIENPADRLGAGGNSCVTIIKDEQGKKETQDEESSKDHSTIHETYEPSWCDYQTSQSSEYKEHMISHEGKKQKRGRNKEKKYKCILCSYASTLHAKLAEHIRTHTGERPFRCSECDYTCIRRDTLKVHMKRHTVVEKPYKCTICSYATDLSAHLKRHIKTHTGEKSFKCTLCDFTTAYKNSLNIHMQYHAGDRPFKCSLCEKAYIKNDQLRKHISIQHMGIRKFICKICHYPFSSSSGLKTHMKRHMGIKQFKCKICDYACVERGTLTKHMRTHTGEKGYKCNICDYAATHESSLINHIRTHTGATPYKCTVCNYAGKQRGALTLHMRTHTKETPFKCMFCDYASANNYHLKIHIKAKHTLERTFDCTNCDYAAIDRWQLKNHMLSHTQDRPFKCNICNYTAKAKHYLNRHLRLHTREKSYKCDICDYAYADMSNLNRHKKIHSKEKPFKCSHCDYATVYANYLRVHMKRHSDEKSYKCNICDFKSRTSSHLRMHIRTHTGQKPYKCNKCDYACTTNTNLKNHMLRHTKLRPYKCTVCQFAFKTASRLRNHMKIHTGIKPYKCDKCGYASAFRANLVGHKRKHTGERPFECKTCGFAVRTQSALLQHLMTHSAEKPFKCGSCDYACKRTADLKQHMRTHTGERPFKCTICDYAASIRKTLKDHMQCRHNKTKKRKSRNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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