Agra014028.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius granarius
Gene Symbol
-
Assembly
GCA_963971325.1
Location
OZ020224.1:3991076-4005398[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 1.6e-05 0.0014 19.8 0.3 2 20 149 167 148 170 0.92
2 32 0.0018 0.16 13.3 0.1 3 23 178 198 176 198 0.98
3 32 7.4e-05 0.0063 17.7 3.6 1 23 204 226 204 226 0.98
4 32 2.5e-05 0.0021 19.2 3.9 1 23 232 254 232 254 0.99
5 32 0.0035 0.3 12.4 6.4 1 23 260 282 260 282 0.98
6 32 0.005 0.43 12.0 0.3 1 23 287 309 287 309 0.98
7 32 0.0022 0.19 13.1 1.9 1 23 314 336 314 336 0.99
8 32 0.0006 0.051 14.9 0.7 1 23 342 364 342 364 0.99
9 32 0.00012 0.01 17.0 0.4 2 23 371 392 371 392 0.98
10 32 0.11 9.7 7.7 3.7 1 23 398 421 398 421 0.93
11 32 0.00023 0.02 16.2 3.0 2 23 428 450 427 450 0.94
12 32 0.00037 0.032 15.5 0.8 1 23 460 482 460 482 0.97
13 32 0.0001 0.0087 17.3 1.7 1 23 488 510 488 510 0.99
14 32 6.4e-07 5.5e-05 24.2 1.8 1 23 519 542 519 542 0.96
15 32 0.0054 0.46 11.9 0.3 1 22 548 569 548 569 0.96
16 32 0.0011 0.095 14.0 5.1 2 23 723 744 722 744 0.97
17 32 0.00012 0.01 17.0 0.3 1 23 750 772 750 772 0.99
18 32 0.00014 0.012 16.8 1.7 1 23 778 800 778 800 0.99
19 32 0.00035 0.03 15.6 5.0 1 23 832 854 832 854 0.99
20 32 0.0094 0.81 11.1 3.8 1 23 894 916 894 916 0.98
21 32 0.0089 0.76 11.2 9.3 1 23 922 944 922 944 0.97
22 32 0.14 12 7.4 5.2 1 23 950 972 950 972 0.97
23 32 0.00018 0.016 16.5 1.4 1 23 978 1000 978 1000 0.98
24 32 0.0023 0.2 13.0 0.6 1 23 1006 1028 1006 1028 0.99
25 32 0.0026 0.22 12.9 0.5 1 23 1034 1056 1034 1056 0.99
26 32 1e-06 9e-05 23.5 0.2 2 23 1063 1084 1062 1084 0.98
27 32 0.00068 0.058 14.7 0.7 1 23 1090 1113 1090 1113 0.97
28 32 6.2e-05 0.0053 18.0 1.4 1 23 1119 1142 1119 1142 0.98
29 32 0.00076 0.065 14.5 0.2 2 23 1153 1174 1152 1174 0.97
30 32 0.00028 0.024 15.9 0.4 1 23 1180 1202 1180 1202 0.99
31 32 5.3e-05 0.0046 18.2 0.8 3 23 1213 1234 1211 1234 0.94
32 32 0.0045 0.39 12.1 1.8 1 23 1240 1262 1240 1263 0.96

Sequence Information

Coding Sequence
ATGTACTATTATGAGTTTCCGTATGATCAAAGCCTGCGTCAGTTATGGATAGATAAATGCAAAATACCCTTGGAGACGGACATAAACACAGCCAGGGTGTGCACTAGGCATTTTAGCGCTGACGATTTTGAGAGACCACCTTTAAAGGAGAATGTTATCCCGTCACTTGAATTGCCCAAAAACCTTTTCAATAACACACTGCAGAACAAAGCAGGAAATAGTTCCGAGGTTTCCGAAGTATCCGCAGATGCGTCAAGTGCAGGCAAAATTACCGTTAAGGATGAACCACATAAGGACGagaaccagatcacggatttgcTTGACAAACATGTATCATCCGTACCAACATATGACATAAAAATCGAAGAAGTAGAAGTCTGCGAAGATACAGCAGACTACACGTGTCCACCGTCAGCCCTACCTAACACAAACACAGGAAAAAGTAAATGTCCCATCTGCGACTATACTTATACCTATCCATACGAGCTTAGACGGCACATGCCCAGGCATACAGGGCAGAAAGACTTTGGATGCCCCATATGCGCCTCAGCATTTGCAACTAAGGGTAAACTAAACGAGCACATGATAACCCACGCCGGAGAAAAACCTTTCACTTGCTCGTTATGCAATTTCGCCTGTGCGCGACGTGCAAATCTCACAAAACACATGAAAAAGCATACAGGCGCAATAGCATTTAAGTGCTCCCTGTGCGATTACTCATGCGCAAAACGCTCCGACCTCACCAAACACATGAGCACGCATTCTGACGACAGAGCGTTCAAATGCCACTTGTGTGACTATGCTACTGCGAGACATTTCGATTTTAAAAGACACATGTCCAGGCACGGCGAGAAACCGTTTAAGTGTTCTCGGTGTGATTACGCTAGTGCTTCACGCGCGGAGGTAAGGACCCACATGGTAACGCACCAAGAAATGCGATATAAATGCTCGTTGTGTGACTTTGCTTGTGCACTGCGTTCAGGTCTGGTTAGGCATACCAGGAAGCACACTGGAGAGAGGCCATTTAAATGCTCGTTATGCGACTACGCGACCACGGAACAACAAGCCCTCACGGTGCATACGAGAAGACATACCGGCGAAAAGCCGGCACAGTGCGACCAGTGCGGCAGCCGCTTTGTAAGTTCGGGGGAACTCAAGGAGCATATGAAGCTGCACACCGGCGAGAAGAAGTATAAATGTAATCTGTGCGACTACGCGGGCCGGCAGAGCAGCCATCTCAAGTTCCATTTTATGAGGAGGCACTCGAAGGAGAGACCGTGTCAGTGCCCGCATTGTGATTATGCTAGTACGCAGCGTTCGTCGCTTAGGACGCACATCATGGCGAGGCATCCGGAGCATTCCGAGTTCCAGATGCCGTTCGCGTGCTCGGTGTGTCCGCAACGCATGCCGACCGCGTCCCACTTTAGAGTTCATATGCGGACGCATACGGGCGAGCGGCCGTATAAGTGTACGCTGTGTGATTTTGCCGGTAGACAGAAGAGTCAAATGAAGATTCATATGAGGAAGCATACCGGGGAGAGACCGGATGCGGTGCATCAGTGTACCGTTTGCGGTAAGCGGTTTCGGGATTTGTCGTCTCTTAAGAGGCATGTGATGAGCGTCCATACGCAGGAGAGGCCATTCAAATGCTCGAAGTGTGATTTTGGGACTGTGCGGCGTGCACGTCTTATACAGCACATGCGAATAAAGATTTACTATTATGAGTTTCCAATTGATGTAAGTTTGCGTCAGTTATGGATAAATAAATGCAAAATACCCGTTGAAGCGGACCTCGACAAGGCCAGGGTGTGCACTCGGCATTTTAGTGCTGATGATTTTGAAAGACCGCCTCTAAAAGAAAATGCTGTACCGTCACTTGAATTGCCCAATGATTTTGTGCATAACTCATCTGAGatCGAAGGAACTTCTGAAATTAGTTCTGAGCATTGTAAGGACATTGAGGTTACGGCAGATGAGTCTAGCGCTGCCAAAAAGTTTAAAGATGAACCACCCAAGGAGGAGATACTGATCACAGACGTGAACGACAAACACACACCGAACTTACCAATctttGACATCAAAATCGAAGAATCGGAATTCCTCGAAGATGCACTCGACTATCCGTGTGCGACGTCTCCACCACCTATTGAAAACACAGGGAAAAGTAAATGCTCAGTTTGTGACTACACTTGTAAATTTCCACATCAGCTCAAAAATCACATGGCTAAGCACACAGGGCAAAAGGACTACAAATGCTCTATATGCGACTCGGCTTTTGCAATTAGAGGTAAACTCACCGAACATATGAAAACGCACAGCGGCGAAAAGCCGTTCAAGTGCTCCCTGTGCGACTACGCTAGCTTGCAACGTTCAAATCTCAAAAGACACATGAACACACATTCAGATATAAAACCGGTCAAGTCTTCTACAGCTAAGATTGCAGCTGGCAGTAAACTAAAAGAACTTTTAAAAACACCCAGTGAAGACAAACCTTTTAAATGTTCGCTGTGTGACTATTCTTGCTTTATACGTTCGAATCTCACGAGACATATGAATAAACATTCAGATGTAAAACCAGTGACGTCCTCAAAATGTAGCACCACTTCTCCACCTAGTTCCTTTAGTCCACCCGGCAGTGAACTAAAGGAACAGTTAAAAACGTCCGGGGACGAGAAACCGTTCAAATGTTTGTTGTGCGACTTTTCTTGCTTGAGTCGCGCTAACCTCACAAAACATATGAATAAACATTCGGGTTTGATTCCACACAACTGCTCCCTCTGTCACTTCTCTTGCACGAAACGCTCCGACCTTACCAAACACATGAGTACGCATTCGGACGACCGAGCATTCAAATGCCGCTTGTGTGACTATGCTACTGCAAAGCATTACGACTTTAAAAGACATACGTACCGGCATGAGAACAAGAAAACGTTTCGGTGTCCCCATTGTGACTTCTCCAGCACGTCGCGTCCCGACGTCACAAAACATATGGCTACGCATCgagaaaggaaatcttttaaaTGCTCGGTCTGCGGTTTTGTTACTATGTGGCGGTTAAATCTCGAGAGACACATGAGGACCCACACAGGCGACAAACCGTATAAATGTACTTTATGCGACTACGCCGCTAAAGAGTCGCAACCGCTCAAGCTGCATATGAGAAGGCACACCGGCGAGATGCCCGTACAATGCGACCAGTGCGGTAAGCGTTTTGTAAACTCGGCTGAACTCAAGTTGCATATGATGATGCACACGGGCGAGAGGAAGTTTAAATGTCCGATGTGTGAGTATGGCGGAAGGCAGAAGAGCGATCTCAAGGCTCATTTTATGAGGAGGCACACAAACGTGCGACCGTTCAAGTGTCCCCATTGTGACTATGCTAGTGCGCAGAATTTCACCCTTCAGTCGCACATCAGGATTCGGCATACGGAGAAGGCGGGCTCCCACTTACCGATCAAGTGTCCGGTGTGTCCACAACGTGTGTTGTCCGCTTCACACCTTAGAGTGCATATGCGGGTACATACAGGTGAAAGGCCGTATAAATGTACTTTATGTGATTTTGCCGGTAGGCAGAAAGGTCAGATGGCGGCGCATATGAGGAAGCATACGGGAGAGAGACTGGAAGCGGTGCACCTATGCACGGAATGTGGTAAGAGGTTTCCGCGGGTTACTGCTCTTAAGAGGCATGTTATGAGCGTTCATACGAAGGAGAGGCCGTTTAAATGTGATAAATGCGATTATGGTACGGTGCGTCGTCCTCGTCTCGTAGAGCACATGCAAAAACATCATACGTAA
Protein Sequence
MYYYEFPYDQSLRQLWIDKCKIPLETDINTARVCTRHFSADDFERPPLKENVIPSLELPKNLFNNTLQNKAGNSSEVSEVSADASSAGKITVKDEPHKDENQITDLLDKHVSSVPTYDIKIEEVEVCEDTADYTCPPSALPNTNTGKSKCPICDYTYTYPYELRRHMPRHTGQKDFGCPICASAFATKGKLNEHMITHAGEKPFTCSLCNFACARRANLTKHMKKHTGAIAFKCSLCDYSCAKRSDLTKHMSTHSDDRAFKCHLCDYATARHFDFKRHMSRHGEKPFKCSRCDYASASRAEVRTHMVTHQEMRYKCSLCDFACALRSGLVRHTRKHTGERPFKCSLCDYATTEQQALTVHTRRHTGEKPAQCDQCGSRFVSSGELKEHMKLHTGEKKYKCNLCDYAGRQSSHLKFHFMRRHSKERPCQCPHCDYASTQRSSLRTHIMARHPEHSEFQMPFACSVCPQRMPTASHFRVHMRTHTGERPYKCTLCDFAGRQKSQMKIHMRKHTGERPDAVHQCTVCGKRFRDLSSLKRHVMSVHTQERPFKCSKCDFGTVRRARLIQHMRIKIYYYEFPIDVSLRQLWINKCKIPVEADLDKARVCTRHFSADDFERPPLKENAVPSLELPNDFVHNSSEIEGTSEISSEHCKDIEVTADESSAAKKFKDEPPKEEILITDVNDKHTPNLPIFDIKIEESEFLEDALDYPCATSPPPIENTGKSKCSVCDYTCKFPHQLKNHMAKHTGQKDYKCSICDSAFAIRGKLTEHMKTHSGEKPFKCSLCDYASLQRSNLKRHMNTHSDIKPVKSSTAKIAAGSKLKELLKTPSEDKPFKCSLCDYSCFIRSNLTRHMNKHSDVKPVTSSKCSTTSPPSSFSPPGSELKEQLKTSGDEKPFKCLLCDFSCLSRANLTKHMNKHSGLIPHNCSLCHFSCTKRSDLTKHMSTHSDDRAFKCRLCDYATAKHYDFKRHTYRHENKKTFRCPHCDFSSTSRPDVTKHMATHRERKSFKCSVCGFVTMWRLNLERHMRTHTGDKPYKCTLCDYAAKESQPLKLHMRRHTGEMPVQCDQCGKRFVNSAELKLHMMMHTGERKFKCPMCEYGGRQKSDLKAHFMRRHTNVRPFKCPHCDYASAQNFTLQSHIRIRHTEKAGSHLPIKCPVCPQRVLSASHLRVHMRVHTGERPYKCTLCDFAGRQKGQMAAHMRKHTGERLEAVHLCTECGKRFPRVTALKRHVMSVHTKERPFKCDKCDYGTVRRPRLVEHMQKHHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00136922;
90% Identity
iTF_00136922;
80% Identity
iTF_00136922;