Basic Information

Insect: Aphodius granarius
Gene Symbol: -
Assembly: GCA_963971325.1
Location: OZ020225.1:25728849-25734126[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.00014 0.012 16.8 0.8 1 23 117 139 117 139 0.98

2 23 1.1e-05 0.00092 20.4 0.9 1 23 145 167 145 167 0.98

3 23 6.7e-05 0.0057 17.9 2.1 1 23 173 195 173 195 0.99

4 23 1e-05 0.00086 20.5 0.4 1 23 201 223 201 223 0.98

5 23 0.00015 0.013 16.7 0.3 1 23 229 251 229 251 0.98

6 23 7.2e-08 6.2e-06 27.2 4.3 1 23 257 280 257 280 0.98

7 23 5.6e-07 4.8e-05 24.4 0.7 1 23 286 308 286 308 0.98

8 23 0.00021 0.018 16.3 0.3 1 23 317 339 317 339 0.98

9 23 1.3e-05 0.0012 20.1 2.8 1 21 345 365 345 367 0.95

10 23 6.7e-05 0.0057 17.9 0.4 3 23 375 395 374 395 0.99

11 23 0.0001 0.009 17.2 0.4 1 21 401 421 401 422 0.96

12 23 0.00014 0.012 16.8 0.5 1 23 507 529 507 529 0.98

13 23 0.00077 0.066 14.5 0.2 2 23 536 557 536 557 0.97

14 23 2.6e-05 0.0022 19.2 0.4 1 23 563 585 563 585 0.98

15 23 0.0067 0.58 11.6 0.3 1 23 592 614 592 614 0.99

16 23 4.4e-05 0.0037 18.4 0.1 1 23 620 642 620 642 0.98

17 23 5.2e-06 0.00044 21.4 3.2 1 23 648 670 648 670 0.99

18 23 1.1e-06 9.6e-05 23.5 0.5 1 23 676 699 676 699 0.97

19 23 9.4e-06 0.00081 20.5 2.4 1 23 705 727 705 727 0.97

20 23 8.2e-08 7e-06 27.0 0.4 1 23 736 758 736 758 0.98

21 23 9.8e-06 0.00084 20.5 0.6 1 23 764 786 764 786 0.99

22 23 7e-05 0.006 17.8 0.4 3 23 794 814 793 814 0.99

23 23 3e-07 2.6e-05 25.3 2.4 1 23 820 842 820 842 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.00014	0.012	16.8	0.8	1	23	117	139	117	139	0.98
2	23	1.1e-05	0.00092	20.4	0.9	1	23	145	167	145	167	0.98
3	23	6.7e-05	0.0057	17.9	2.1	1	23	173	195	173	195	0.99
4	23	1e-05	0.00086	20.5	0.4	1	23	201	223	201	223	0.98
5	23	0.00015	0.013	16.7	0.3	1	23	229	251	229	251	0.98
6	23	7.2e-08	6.2e-06	27.2	4.3	1	23	257	280	257	280	0.98
7	23	5.6e-07	4.8e-05	24.4	0.7	1	23	286	308	286	308	0.98
8	23	0.00021	0.018	16.3	0.3	1	23	317	339	317	339	0.98
9	23	1.3e-05	0.0012	20.1	2.8	1	21	345	365	345	367	0.95
10	23	6.7e-05	0.0057	17.9	0.4	3	23	375	395	374	395	0.99
11	23	0.0001	0.009	17.2	0.4	1	21	401	421	401	422	0.96
12	23	0.00014	0.012	16.8	0.5	1	23	507	529	507	529	0.98
13	23	0.00077	0.066	14.5	0.2	2	23	536	557	536	557	0.97
14	23	2.6e-05	0.0022	19.2	0.4	1	23	563	585	563	585	0.98
15	23	0.0067	0.58	11.6	0.3	1	23	592	614	592	614	0.99
16	23	4.4e-05	0.0037	18.4	0.1	1	23	620	642	620	642	0.98
17	23	5.2e-06	0.00044	21.4	3.2	1	23	648	670	648	670	0.99
18	23	1.1e-06	9.6e-05	23.5	0.5	1	23	676	699	676	699	0.97
19	23	9.4e-06	0.00081	20.5	2.4	1	23	705	727	705	727	0.97
20	23	8.2e-08	7e-06	27.0	0.4	1	23	736	758	736	758	0.98
21	23	9.8e-06	0.00084	20.5	0.6	1	23	764	786	764	786	0.99
22	23	7e-05	0.006	17.8	0.4	3	23	794	814	793	814	0.99
23	23	3e-07	2.6e-05	25.3	2.4	1	23	820	842	820	842	0.98

Sequence Information

Coding Sequence: ATGAACTTTGAAATCGTCTGTCGCATATGTATAAAACCTTCCCAAGAAATGCGCCATATATCTgaagaaaaaattattgataGGCTGAAAGATATTGCACCAATATCAGTAGACGAATCGGATGGATTACCACAGAAGATATGCGATCACTGCAGAGAAGAGCTAAGTAGGTGCTACTCCTTTAGAGTAATAATTGTACAAAGCGACAAGGAGTTACGAGCAATTCTAAACCAACGTAAAAATTCCGATGAGGGCTTGCACAACCTTGGTGATCATCATGTAAAAGAAGAAGAACCGTGTAGTAACATACAAGGACCAAAACCTACTGTAGATTTAGATAAACCTAATTTTGTATGTGAAATATGCAAAAAAACATTGAGTAATTTTCCTGCGTTGAAAAGACACAAGAAAATTCATTCCAATATTAAACCGCACAAGTGTACTTTGTGCCCTGCAGCTTTTAGAGAAAGCGGAAATTTAACTAAGCACATAAAGATGCATTCGCAGGACAAGAAATATCAGTGCAGTGAATGCGATTTACGATTTTTCGAGAAGAACAAATTGTCCATGCATATGAGGACTCATACTGGTGAGCGACCTTACAATTGTACTGTTTGCTCACGAGCTTTCCGTACGCCGGGACAGGTTCAAACTCATATGAAGaTTCATACTCGTGAGCGACCATACACATGCGACATCTGTCAGAAGTCGTATCCCTATGTTGCCTCGCTAGAACAACACAAAAAAATCCACACAGGAATAAGATCGTACACCTGCCATGACTGCAACAAATCCTTCTCGCAAAAAGTAAACCTCAACAGCCACATCCGAAGAAAACATACAAATGAGCGACCCTACATGTGTACAGAGTGCGGCAAGACCTACGTTACCAAATACGAACTAGACAACCATATGCGCGAGCACACAGGTGAAAAGAAACCACTACGGTTTTCGTGTTCGCAATGCGTCAAACAGTTTGCCTCCGCTGGTGACCTCAAAATACATTTTAGGGTTCACACTGACGAACGGCCATACCAGTGCGATGTTTGTGGTAAAAAATTTCGAACCTCTTCAAATATGGCAGCGCACAAAAGGTGCCACACGGGGGAAAGGAAACACGGTTGTCAGTACTGTGGGAAAGCGTTTAAGGAGtcttcaattttgaaaatacaccTCAGAACGCACACCGGCGAGCAACCTTATTCCTGCCAAGTTTGCGCAATGAATTTTACACAGAAGAGTACGCTTACCACCCATATGAAGATTGAGAAAGATGATGCATTACCGCATCAGATATGCAAACAATGCGTATGTGAGATAAATCAATATTACTCCTTCAGAATGATAATTATACAGAGTGATACAGATTTAAGGGCAATTCTACTTACCAAACCAAAGAGCGCAAAACAGGAAGATAATGACGACATGAGCAATCATGGTGATCCACCGGATGTCAAAGAAGAAAGTACCGATGACCCTGAAGAAAATAATTTAGACTTAGAGAAACCTCATAACaaatttatatgtaaaatatgcaaaaaattaTTGAATACTTCAGCAGCTTTGAAGCAGCATATGAAGATTCATACGGACATCAACCCTCGTTCGTGTGAAATATGCGAGAAAGTGTTGCGAAATGTGCCTGCTTGGAAACGTCACATGAAAACACATTCCTCTGATAGACCGCACAAGTGTGCAGTGTGTTCTGCGGCTTTTAGAGATGGCGGAAATTTGACCAAACACATGAGGATACACAGGAATGAGGAGAAGAGATATCAATGCACGGAATGTGAATTGTGGTTTGTTGCTAGACATGGTTTGATTGTACATATGAGAAGTCATACCGGAGAAAGGCCCTATAAATGCGCTATTTGCTCAAAGGCTTTCAGCATACCTGCACTTGTGAAGAAACATATGAGGGCGCATACAGGTGATCGCCCGTTCACCTGCGACATCTGCCACAAGTCATTCCCATACACAACCTCGTTAAAATCCCACATGCTCACCCATACAGGCGAAAAATCCTACATATGCCAAGACTGCAACAAACCATTCGCCATGAAATCACAACTCAAAATGCACATCAGAAGGATCCATACTCGCGAACGCCCCCACATGTGCAGTGAATGCGGCAAAACGTTCGTGACAAGAACCGACCTCTATAACCACACGCGCGAACATACAGGCGAAAAGAAACCATTACGGTTTGCCTGCCCCGAATGCGATAGAAGGTTCACCTCTTCTTCGGGGTTGAAAGAACACATGAACACGCACTCGGAGGAACTGCCGTACCAATGCGATGTTTGCGGGAAGAAATATAGACGGCGATGGGGGTTGGCAGTGCATAAGAAGTCGCATACCGGGGAGAGAAAACACGGTTGTCAGTATTGTGGAAAGGCGTTTAAAGAGTCTCAGGTTTTGAAAACGCATTTGAGGATCCACACGGGCGAGCGGCCGTATTGTTGCGAGGTTTGCGGGAGGAGTTTTACGCAGAAAGGAACGTTGACCACGCATATGAAGGTCCATAGTAATGCTGAAGTGGTTTGA
Protein Sequence: MNFEIVCRICIKPSQEMRHISEEKIIDRLKDIAPISVDESDGLPQKICDHCREELSRCYSFRVIIVQSDKELRAILNQRKNSDEGLHNLGDHHVKEEEPCSNIQGPKPTVDLDKPNFVCEICKKTLSNFPALKRHKKIHSNIKPHKCTLCPAAFRESGNLTKHIKMHSQDKKYQCSECDLRFFEKNKLSMHMRTHTGERPYNCTVCSRAFRTPGQVQTHMKIHTRERPYTCDICQKSYPYVASLEQHKKIHTGIRSYTCHDCNKSFSQKVNLNSHIRRKHTNERPYMCTECGKTYVTKYELDNHMREHTGEKKPLRFSCSQCVKQFASAGDLKIHFRVHTDERPYQCDVCGKKFRTSSNMAAHKRCHTGERKHGCQYCGKAFKESSILKIHLRTHTGEQPYSCQVCAMNFTQKSTLTTHMKIEKDDALPHQICKQCVCEINQYYSFRMIIIQSDTDLRAILLTKPKSAKQEDNDDMSNHGDPPDVKEESTDDPEENNLDLEKPHNKFICKICKKLLNTSAALKQHMKIHTDINPRSCEICEKVLRNVPAWKRHMKTHSSDRPHKCAVCSAAFRDGGNLTKHMRIHRNEEKRYQCTECELWFVARHGLIVHMRSHTGERPYKCAICSKAFSIPALVKKHMRAHTGDRPFTCDICHKSFPYTTSLKSHMLTHTGEKSYICQDCNKPFAMKSQLKMHIRRIHTRERPHMCSECGKTFVTRTDLYNHTREHTGEKKPLRFACPECDRRFTSSSGLKEHMNTHSEELPYQCDVCGKKYRRRWGLAVHKKSHTGERKHGCQYCGKAFKESQVLKTHLRIHTGERPYCCEVCGRSFTQKGTLTTHMKVHSNAEVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -