Agra018984.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- -
- Assembly
- GCA_963971325.1
- Location
- OZ020225.1:8832407-8833093[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-08 4.5e-05 23.9 0.0 1 40 18 57 18 61 0.92 2 2 5.2 3.7e+03 -1.4 0.0 28 37 148 157 148 159 0.81
Sequence Information
- Coding Sequence
- ATGCCTAGAAAATACGAAAGGAAGTTGGGATCGAGAAGATATGCAGATTACACCGAAGAAACATTACAAGCATGTTTAAATGAAATTCGAAATGGGCAAATATCACACAGAAAGGCTGAGGCTAAATACAAAATACCTAGACGAAAAATATGGAAAAAATTAAAGGGCAAACATATCAAGAAACCAGGCACACAACCTGTATTTAGTCCTaaggaagaagaagaatttGTGAACTGCATAATCTCTATGGGGGAGTATGGCTTCCCTGTAAATGATAGGGAATTACGGCATATTATGAAAAATTATTTAAACCGATGTGGAAGGCAAGTTAAAATTTTCAAAGACAACATGCCTGGTAGTGAATGGGTGAAGAGATCTCTAGGCAGACATCCTAGACTTTCAGAAAGATTTGCTGAGAATGTAAAGCGCACAAGAGCTGCGGTAAATGAATCTACGCTACAAGAGTTTATCGAAAATTTGGGAAATGAAATACGGGACATTCCTGCCACACACATATGGAATTTTGACGAGACGAATCTCACCGACGATCCGGGTAAAAAGAAAGTTATTGTCAGAAAAGGGTGCAAGTATCCAGAAACCACAAgaaatgcatcaaaaattcAATATCTGTCATGTTTTCTGGGAGTGCTGCTGGGGAACTCCTCCATACGTGGTTTACCGATCTAG
- Protein Sequence
- MPRKYERKLGSRRYADYTEETLQACLNEIRNGQISHRKAEAKYKIPRRKIWKKLKGKHIKKPGTQPVFSPKEEEEFVNCIISMGEYGFPVNDRELRHIMKNYLNRCGRQVKIFKDNMPGSEWVKRSLGRHPRLSERFAENVKRTRAAVNESTLQEFIENLGNEIRDIPATHIWNFDETNLTDDPGKKKVIVRKGCKYPETTRNASKIQYLSCFLGVLLGNSSIRGLPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -