Agra009597.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- -
- Assembly
- GCA_963971325.1
- Location
- OZ020222.1:29512521-29513267[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-08 2.3e-05 24.9 0.1 1 39 18 56 18 61 0.92 2 2 1.4 1e+03 0.3 0.1 14 23 156 164 146 166 0.72
Sequence Information
- Coding Sequence
- ATGCCTCGAAAATATCGGCGAAAAGTAAATGCTTCTTTACGAGCTACTTGGACGGAAGAACAGTTACGAACAGCTGTGGAAAAGGTACAAGCGGGAGAAATAAGCAAGCGTGAAGCACATAGGCGCTATAACGTTCATTCGAGAACTTTAGAACGCAGAATGAATACGGGAAGTTTTGAAAAAGGTGACCTTGTATACTTTTACGTTTTTGAATTCTGTAATAATTTACCAAttgttattttaagaatcttaggAAAGGAGAATGAAAAAAGATTGGTTTCCCATATTCAAAGATTGGTTGCTGCTGGTTTCGCTCCCGATAGAAAAGCCGTTAGGTCACTTGcatacaaatttgcacagaaattAAACATCGACCACCATTTTTCAGCGGAGAAAGAAATGGCGGGAAATGCATGGCTACAATCGTTTTTAGAAAGAAATCCCGAATTATCCATAAGACAAGCTGAGGGCCTTTCTCTCTCTAGAGCTCAGGGAATGAACAGGAAAGATGTGAaagatttttttgaaattttggaaAAGGTAATGACTGAAAATGGTTTGCTTGAGAAACCATCTCACATTTTCAATATGGACGAAACCGGCGTACAGCTGATCAATAAGCCTGGCAAAGTCATAACTACGAAGGGTGCCAAAGCAGTGCATGTACTCACTTCAAAGGAAAGGGGAGAAAATGTGACGGTCATAGGTTGTTGCAGTGCTGATGGTACCTCCGGTACTGATTTTTAA
- Protein Sequence
- MPRKYRRKVNASLRATWTEEQLRTAVEKVQAGEISKREAHRRYNVHSRTLERRMNTGSFEKGDLVYFYVFEFCNNLPIVILRILGKENEKRLVSHIQRLVAAGFAPDRKAVRSLAYKFAQKLNIDHHFSAEKEMAGNAWLQSFLERNPELSIRQAEGLSLSRAQGMNRKDVKDFFEILEKVMTENGLLEKPSHIFNMDETGVQLINKPGKVITTKGAKAVHVLTSKERGENVTVIGCCSADGTSGTDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -