Agra003063.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- -
- Assembly
- GCA_963971325.1
- Location
- OZ020221.1:12146536-12154924[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.3e-11 4.6e-08 33.5 0.0 4 42 14 52 11 55 0.93
Sequence Information
- Coding Sequence
- ATGGAGAAACGAGGAAAATACGGAAAGTGGTCGCAAAAGGAACTTCAGCTGGCTGTAAATGCATTCTTAAATGGTGGATTTGGGCTCAATGAAGCTGCAAGGGTGTACAATATTCCGAAAGCTACCTTAAAACGACatattgaaaacaaaaataaagtagcAAACGCGGATATCAAAAAATTTGGCAAATGCACTACTTTACCAAAGGAAATGGAAGACGAACTAGCAAACCATATTCTAAAGCTAGAAGAAATGATGTTTGGTTTAACGATTTTGGATATAAGGAAGCTTGCATACGAAATAGCGGAAAGAAACAATATTCCTCATACATTTAATAAGCAGAAGAAACTTGCTGGAAAAAAGTGGTATTACTCATTTATGCATCGTCACACTAACTTAACACTCAGGCAGCCAGAATCAACTTCGATTGCTAGAGCAAAAGGGTTCAACCGAGAAAATGTAAATCACTTTTTTGATGTACTTGAAAAAATTCATGCCGAACATAAATTAGATGCTACTAGAATTTTTAATGTGGATGAGAGCGGTTTCTCTACTGTGCAGAAAAAATCACAGAAAATTGTTGGACAAAAGGGCAAGAAGCAAATTGGGGCAATCTCAAGTGGAGAACGTGGGACTAATACCACTATGGTTTGTTGTGTCAGTGCATCTGGGCAGTTTATTCCACCAATGATTATCTATAAGCGGATGAGAATGGCTCCAGAATTAAAACTAGGCGCACCTGCAGGAAGTTTAGTTGAAATATCAGAGAGTGGATACATAAACTCAGAGCTCTTTACTAAATGGTTACAACATTTTATCAACGTAGTAAAGCCAACCATAGATAAGAAAGTCCTTTTGGTGCTTGATGGGCATTCAACGCACAGCAAAAATTTGGATGCACTATTATTAGCTCGAGAAAATGGggtaattttattgcaacttccTGGGCATACCACACATCGTCTACAGCCACTTGACGTATCGTTTTTCAAACCTATGGAAACATATTATATTCAAGCCATGGAACGTTGGTTAAGAACGAATCCTGGAATGAAAGTGACAGTGTTTCAGATATCTGAGCTCTTATCTGAAGCCTATGGAAAAGCTGCATGTATTCAGACCGCTGTTAATGGGTTTAAAGCCACTGGAATTTGGCCTATTGATAGGAATGTTTTTACCGATGTTCATTTCGCTGCAGCTAGTAACCTAAATCAAAATATGGAGCAAAATGTTGCAGAACATCAGAATGCTATAGGCGACACCCTTAATGAAGTATCAGCATGGAATGAAGCAGATGGGCATGAAACTAATGATTGGAATGGAGGTATAGGCGAGGTTGAAGGTGAAAATGATGAGACTAACAGTGAAGACGAAGGAAACAATGGATGTGCACAGATATTGTTAAATAAAAGAATACAACGAAGAGAGAATGTAAAAAGGAATTTAGCCATGTTGGAACCAAGTTTTTGTGACCCTGGGCCTTCTACATCAGGACATACAAACGGAGAACAATCTGGGGGGAATAAGGCAAATCTAAATGTTTCTATCGAGGAGCTTTCACCTATTCCTGTACCTGTAAagaaacaaaaacaatccagaggAGCACAAAAAGCTGAAGAACTTACGAGCACTCCATATAAAGAAGACTTAATTTCTAAAAAGAAGAAGGTTCCTACAAAGTCTCAACGAGGGAAACGAAACCAGAAAAAGTCTCAGGTGACAATTAAGAAACAAAGCCACAAGACAGTTGCACAAACATACACCCGTGCAGCATTCGTTCTTCCAGCGCCAGCGGTCGATTTGAGGAATTTTACGCGGGACAACGGCCATCACGAGTTGAACCCGACATTTGGCGATGCTATGCAGCGAAATGTATTGATAAGTTTACGTATGTTGTACATAGCGCGCTTTTTTGCTGTTGTGATACGGACTTCGCATTGGGATAGGATAGGCACCCAAGCGCAACTGGTAACCCTGTGGCGGAACAAAATTGCCTGCTTGTCAGATCCGTAG
- Protein Sequence
- MEKRGKYGKWSQKELQLAVNAFLNGGFGLNEAARVYNIPKATLKRHIENKNKVANADIKKFGKCTTLPKEMEDELANHILKLEEMMFGLTILDIRKLAYEIAERNNIPHTFNKQKKLAGKKWYYSFMHRHTNLTLRQPESTSIARAKGFNRENVNHFFDVLEKIHAEHKLDATRIFNVDESGFSTVQKKSQKIVGQKGKKQIGAISSGERGTNTTMVCCVSASGQFIPPMIIYKRMRMAPELKLGAPAGSLVEISESGYINSELFTKWLQHFINVVKPTIDKKVLLVLDGHSTHSKNLDALLLARENGVILLQLPGHTTHRLQPLDVSFFKPMETYYIQAMERWLRTNPGMKVTVFQISELLSEAYGKAACIQTAVNGFKATGIWPIDRNVFTDVHFAAASNLNQNMEQNVAEHQNAIGDTLNEVSAWNEADGHETNDWNGGIGEVEGENDETNSEDEGNNGCAQILLNKRIQRRENVKRNLAMLEPSFCDPGPSTSGHTNGEQSGGNKANLNVSIEELSPIPVPVKKQKQSRGAQKAEELTSTPYKEDLISKKKKVPTKSQRGKRNQKKSQVTIKKQSHKTVAQTYTRAAFVLPAPAVDLRNFTRDNGHHELNPTFGDAMQRNVLISLRMLYIARFFAVVIRTSHWDRIGTQAQLVTLWRNKIACLSDP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00136769;
- 90% Identity
- iTF_00136769; iTF_00136770; iTF_00980890; iTF_00136763; iTF_00136764; iTF_00136765; iTF_00136766; iTF_00136768; iTF_00136772;
- 80% Identity
- iTF_00136770; iTF_00136763; iTF_00136764; iTF_00136765; iTF_00136766; iTF_00136768; iTF_00136769;