Basic Information

Insect: Aphis gossypii
Gene Symbol: -
Assembly: GCA_004010815.1
Location: NW:231640-248907[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.03 2.3 8.4 2.6 2 21 288 309 287 311 0.92

2 8 4.4 3.3e+02 1.6 0.7 3 17 350 364 348 365 0.88

3 8 5e-05 0.0038 17.1 0.9 1 23 377 399 377 399 0.94

4 8 0.18 13 6.0 5.4 2 23 412 434 411 434 0.92

5 8 2.8e-05 0.0021 17.9 0.1 1 23 440 462 440 462 0.99

6 8 0.0031 0.24 11.5 3.2 1 23 468 490 468 490 0.98

7 8 6.4e-05 0.0048 16.8 3.2 1 23 496 519 496 519 0.98

8 8 0.0068 0.51 10.4 1.8 1 23 528 550 528 550 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.03	2.3	8.4	2.6	2	21	288	309	287	311	0.92
2	8	4.4	3.3e+02	1.6	0.7	3	17	350	364	348	365	0.88
3	8	5e-05	0.0038	17.1	0.9	1	23	377	399	377	399	0.94
4	8	0.18	13	6.0	5.4	2	23	412	434	411	434	0.92
5	8	2.8e-05	0.0021	17.9	0.1	1	23	440	462	440	462	0.99
6	8	0.0031	0.24	11.5	3.2	1	23	468	490	468	490	0.98
7	8	6.4e-05	0.0048	16.8	3.2	1	23	496	519	496	519	0.98
8	8	0.0068	0.51	10.4	1.8	1	23	528	550	528	550	0.97

Sequence Information

Coding Sequence: ATGTTGTCATCAATCGAACTACAGCCATCTAATCAAACACTGAGGCTTGTAGATAGAGATCGATTGATTGCACAACGTGTAAGAGTAATCTCTGACGAAAAGCTTATATCTAAAACAACAGAAGCGGCTAGACCAcaacaaaatttattgaataattttagtgaCTTGACCAatgattttgatattattcaaaattcaaacagCGATGATCTAGTAGACTTAGGTAATAGTCaaatgtcaacattttttcgagaattttcagaaaatcaaaatacattgtgcaaagaagaaaaaaaaacagccaCTTCTAATTATAAGACTATAAACGGATTAGGATTTTACTATTGTGATTCATGTCCATTTCTTTGCTTAAgtgtcaaaattattttggagCATAATGAAAAAAGTGATCACTTCCATCATTCATCACTTAAATCTTTACTGAGAACAAAATGTATAGgatgtgataatatattttattcagtaaATGTTCTTCGAtttattgattttaaatttcagtgCCATTTGATTGAAGATCATGATGTTTTATCTGTTGAAGTTGATGGATTAGTACAGCTGGTAATTGAAGCTAATAAAGAAGACACTGTATACaacaataatgATACATCTCaaaccaaaaacaataatttaccaGATTTTAATGATACAATACTGGATACTTCTGAGTTTGGCTGTAAATCAGATTTTATTGACAATCAAAACACAgGAGAAAAAAGTTCAGCTGAAAATTATCATTCGAATGATGCTTGCGATGATTTTTGGGAGTATCAAGAACAAGTATTTAATGGACTTCAAGAAAAAAACACCATTgatgatacaaatattatagaaaaacatttaaggtgtACCAATGGAAAGTGCAAAGTTAGATTTAGCACAGAAGAAAATTTGatgtatcatttaaaatgtcatttagatgacaaatttaaatgcatagaATTCGAATGCCAGTTTACCGATTCTAAATGGTTATCTATGATGACACATTTGTGGAAAACTCATAATATAGACATTGAAATGTTCGGTTGCAACCAATGCGGATTCAAGactaatagTTTATACAAATTGAAcacatttcataaaaacattCATAAAACGGAGAAACCATTTTTGTGTCCTGAGTGCCAGAAAGGATTCAAATCGATCAAACAGCTTAGGAACCATAAGTCGATTCACTTTAAAACCGAGAAGCCACCGCCTAAATTGGAACTAACGTGTCCGCACTGTTGCCGCAACTTCGGCACCAAGCACCTGTTGCATCAGCACATTGCCGCCGTGCACATTGGGGTGCGGCCTTATACTTGCCAAATCTGCGGGTACGCCACTGCAATCGCCAGCTCGCTGAAGCTCCACCAGCGGTCGCATACAGGCGAAAAGCCGTTTTCGTGCGACGAGTGCGACTTCCGGACCGCCGATCACAACACGTTGCGAAAGCACAAGTTGCGGCACACTGGCATAAAGAAATACACATGCCCAATGTGCGATTACAAGTGCATACAGGCCTCTTCATACAAGAATCATCTTAAGTCTAAACACCCAGGGATGGATGATGGTTTCATGTACAGCTGTAATATGtgcaattttaaaaccattcgTAAAGATAAGTATATGTTACATATTGTCAAACACAAGGAGGAATCGGTGCACATCAACGGCATATGTGAACCTACCGCCAACTTAGATGATatgctcaatgaaaaagaaaaaatacaagcCGAAATCATCGAACAACCGTATTACCCCTTTAACACTATCAGAGTTAAGCCAATAAACACGATTAACAATGAGACAGTGGAAAACACTATCTAA
Protein Sequence: MLSSIELQPSNQTLRLVDRDRLIAQRVRVISDEKLISKTTEAARPQQNLLNNFSDLTNDFDIIQNSNSDDLVDLGNSQMSTFFREFSENQNTLCKEEKKTATSNYKTINGLGFYYCDSCPFLCLSVKIILEHNEKSDHFHHSSLKSLLRTKCIGCDNIFYSVNVLRFIDFKFQCHLIEDHDVLSVEVDGLVQLVIEANKEDTVYNNNDTSQTKNNNLPDFNDTILDTSEFGCKSDFIDNQNTGEKSSAENYHSNDACDDFWEYQEQVFNGLQEKNTIDDTNIIEKHLRCTNGKCKVRFSTEENLMYHLKCHLDDKFKCIEFECQFTDSKWLSMMTHLWKTHNIDIEMFGCNQCGFKTNSLYKLNTFHKNIHKTEKPFLCPECQKGFKSIKQLRNHKSIHFKTEKPPPKLELTCPHCCRNFGTKHLLHQHIAAVHIGVRPYTCQICGYATAIASSLKLHQRSHTGEKPFSCDECDFRTADHNTLRKHKLRHTGIKKYTCPMCDYKCIQASSYKNHLKSKHPGMDDGFMYSCNMCNFKTIRKDKYMLHIVKHKEESVHINGICEPTANLDDMLNEKEKIQAEIIEQPYYPFNTIRVKPINTINNETVENTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01168034; iTF_00973327; iTF_01329359; iTF_00135732; iTF_00019737; iTF_01305977; iTF_01304464;
90% Identity: -
80% Identity: -